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running data_v2 for summary script

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This commit is contained in:
Tanushree Tunstall 2020-10-23 11:03:38 +01:00
parent 7c343f8bde
commit c2f3023ce5
2 changed files with 3 additions and 4 deletions
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5
read_data.R
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@ -19,9 +19,8 @@ outdir_stats = "~/git/covid_data/output/stats/"
#========================================================== #==========================================================
# input data files # input data files
infile_icu_wf = paste0(datadir,"icu_covid_wf.csv") infile_icu_wf = paste0(datadir,"/icu_covid_wf_v2.csv")
infile_icu_lf = paste0(datadir,"icu_covid_lf.csv") infile_icu_lf = paste0(datadir,"/icu_covid_lf_v2.csv")
#%%======================================================== #%%========================================================
# read file # read file
wf_data = read.csv(infile_icu_wf , stringsAsFactors = F) wf_data = read.csv(infile_icu_wf , stringsAsFactors = F)

2
summary_stats_time.R
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@ -12,7 +12,7 @@ getwd()
source("read_data.R") source("read_data.R")
#========================================================== #==========================================================
# define output filenames # define output filenames
summary_stats_timepoint_combined = paste0(outdir_stats, "summary_stats_timepoint_v1.csv") summary_stats_timepoint_combined = paste0(outdir_stats, "summary_stats_timepoint_v2.csv")
#========================================================== #==========================================================
# data assignment for stats # data assignment for stats