From 66ebb1a30a83fa8c407845079509f24241552dd4 Mon Sep 17 00:00:00 2001
From: Tanushree Tunstall <tanu@tunstall.in>
Date: Mon, 16 May 2022 08:05:41 +0100
Subject: [PATCH] saving work before adding uq stuff

---
 MultClassPipe3.py                         |   4 ++--
 MultClassPipe3_CALL.py                    |   2 ++
 __pycache__/MultClassPipe2.cpython-37.pyc | Bin 2884 -> 2884 bytes
 __pycache__/MultClassPipe3.cpython-37.pyc | Bin 4697 -> 4759 bytes
 __pycache__/loopity_loop.cpython-37.pyc   | Bin 4323 -> 4323 bytes
 imports.py                                |   1 -
 6 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/MultClassPipe3.py b/MultClassPipe3.py
index aa161ab..b7126fc 100644
--- a/MultClassPipe3.py
+++ b/MultClassPipe3.py
@@ -61,8 +61,8 @@ from imblearn.combine import SMOTEENN
 from imblearn.under_sampling import EditedNearestNeighbours
 
 #%%
-# rs = {'random_state': 42}
-# njobs = {'n_jobs': 10}
+rs = {'random_state': 42}
+njobs = {'n_jobs': 10}
 
 scoring_fn =  ({ 'fscore'       : make_scorer(f1_score)
                   , 'mcc'        : make_scorer(matthews_corrcoef)
diff --git a/MultClassPipe3_CALL.py b/MultClassPipe3_CALL.py
index c1d3808..c9e1032 100644
--- a/MultClassPipe3_CALL.py
+++ b/MultClassPipe3_CALL.py
@@ -8,6 +8,7 @@ Created on Tue Mar 15 11:09:50 2022
 #%% Data
 X = all_df_wtgt[numerical_FN+categorical_FN]
 y = all_df_wtgt['mutation_class']
+#y = all_df_wtgt['dst_mode']
 #%% variables
 
 #%% MultClassPipeSKFCV: function call()
@@ -21,3 +22,4 @@ mm_skf_scores_df_all = pd.DataFrame(mm_skf_scoresD)
 mm_skf_scores_df_all
 mm_skf_scores_df_test = mm_skf_scores_df_all.filter(like='test_', axis=0)
 mm_skf_scores_df_train = mm_skf_scores_df_all.filter(like='train_', axis=0) # helps to see if you trust the results
+]
diff --git a/__pycache__/MultClassPipe2.cpython-37.pyc b/__pycache__/MultClassPipe2.cpython-37.pyc
index 581275298e03563a94d7aef5bad576be8b668d18..52416207856dcb185494adda7c8ad810f08140ca 100644
GIT binary patch
delta 306
zcmX>ic0`QZiI<m)0SGvBN;YyoVr7eB4i58;n*5p7o-t~&F<YZf6iY!-YQZh8<ebFf
z;>@(n)FMsBTdc(;sRhNF>_s|2twp*ZLJvqxzQ`sr`3sv8qw!>M_Vtoc9GQ6qr6utx
zX;D0RrMam^naPPc@tGA-lkc;uc||ej<`mpwN-4R;lnTT}X;I8YX-2o0E7Fs0u_WiD
z6-RLvWEQ06Wagy;nZ?QZMXALgqd0(a@p*~4skfMctXqsFQIq{Stc9ak5|filZ?PBU
zC&wq2Ca+{Dikv)`;{;>$<TOqNRy&~Uq9%89`T%`(gEJOLnsHeH$wDqwAUT~&7D#U8
UvXrs~c_kV|M4}Q=lR3C;03`fgq5uE@

delta 304
zcmY+<y-EW?5CGs@_I~%0N{J{0Y$Bx8Xdo(xDMhgm?BqB%yXV5)W!=4lwAPkeSor`}
zBH|mQ@DXGh#WxUNz`4?a`4|{xm|6Cgy?EN~(iR4J-F}I`Js-%$<r&yt@5li=^6&cK
zD$Ny8mZ!!@A-Ntp;F*dmGYssPzuM6woY%Vzd-lg4IAgmOJg-A2OI26NOhBis3$7(g
z^F%Jdeg<17K#E*Jdsac4V`>3Jiya_~>>6B_3j>jois!QASQ<9h+%&5~>?LJda3ENL
zQ-M7X4_3fU8LJ`CbC#qvdur*-K8Ej(v?AK{rg$6J`{)#Z`iQR3G2KUR=>UD8ee{h^
QHjbMgWJC6!8ym)le>yK|ZvX%Q

diff --git a/__pycache__/MultClassPipe3.cpython-37.pyc b/__pycache__/MultClassPipe3.cpython-37.pyc
index c225213e9151606d369d26526629a2801f0f5fc0..5acf8396f8d152347f8797ad85987001ceb890c0 100644
GIT binary patch
delta 370
zcmcbqGF_F|iI<m)0SLC<ZcO5t$ScWMvQb@~NgzcjMLCl(DlkPQMHNT~P4;6_l~tR=
z78RVLo}!VWna-TXn4*=U-NG0ZlEM_spsBNY0+TAU!Y!Vn#JrUJ-1y>>#FEsPT0oO;
zvE{{Q<tG)t1lhBBD=R0fs0B!vIj=Og$P&y-PAn<1+I*SoI}_ur$)|axrEhWM=BK3Q
z#HZ!m;)AdXG7D03GV@YzO=jeiVyvDl!*_wL7N}V>bn+)YXU3?>X8eIbvV%VxNPgjW
z0FtHx?m)6uKpjXf6{up2ova{e0AvRWD#}F(X67d4q$U>S>A_4c0y(xw8%RV=o**a&
zRJdGF&O90<7y}~WKm^FjqH0v42FSg|VFPq$X-=vgJCIkLG5M2Vlpr$)BL@>3BMkDe
F0RU4#WuX87

delta 306
zcmbQPdQ*khiI<m)0SJ~>7$*r#<dtMh*{H70G&zn*RaR*ZTU20*a*9fdYC3ZoV~Sde
zdJAJzPzqBpgQmvj1x%{Uo1e0BvWl7jwcldSE6pu31+$V9ONz`kGjo4uVvL&nn^#&o
ziX%5aB{e5LE$<c|gjJAPkeZX3ml`$MkWY%SWU>$61-3GvX3gNqO8m}@w<f3Y2Lj0*
z{MkTKMZf__rV6+N$+ZINK=P_U6=US&06_yFyHQY4?v`L?Zc<KaVo{zR%;X|1pm9ao
zAO}r8ASeb@cwJCVHwq*OvZ$y8l_&)%<gfv{t~4jrjvdG=PMNGD6vfNN#t4HvYycUy
BRm}hZ

diff --git a/__pycache__/loopity_loop.cpython-37.pyc b/__pycache__/loopity_loop.cpython-37.pyc
index 994b92f60f0aecc06c7eb57c7f292c2cf036856e..6b2550b75b72ee45495f2016b1e237f065822e58 100644
GIT binary patch
delta 173
zcmaE?_*jwKiI<m)0SGvBN;YywaWh73PUFsFWQ>}8l}DZ{iajkqCnY{FKWg$n9y9kS
zo{IRAqQuO+c#v=uH;|WFTms?nRH8@$d2lJd-29Z(ocMywg4CSMyws@4)x7qM1(SF4
gzGE!fyo&Dvqr4Z;0Y%;*q6kD3pb~|XX9{=$0Q=lG0{{R3

delta 173
zcmaE?_*jwKiI<m)0SH`l%{OvKaWmf9oW`BU$arh=RUUb+TkL81IVtgZ`L`zj<1ur;
z#ZwVqQk0mP7Y`D?#SP@87MDOcJe4R?KptF*FE>9WH7C9xvmiAmGcWbl<Z51f#;VD?
gdEYVCY+l88fl=NY=zt<05K#jns!)mQ$ukAK04p^-O8@`>

diff --git a/imports.py b/imports.py
index c6a2531..f0a0dfe 100644
--- a/imports.py
+++ b/imports.py
@@ -99,7 +99,6 @@ from MultClassPipe2 import MultClassPipeline2
 from loopity_loop import MultClassPipeSKFLoop
 from MultClassPipe3 import MultClassPipeSKFCV
 
-
 gene = 'pncA'
 drug = 'pyrazinamide'