diff --git a/MultClassPipe3.py b/MultClassPipe3.py index aa161ab..b7126fc 100644 --- a/MultClassPipe3.py +++ b/MultClassPipe3.py @@ -61,8 +61,8 @@ from imblearn.combine import SMOTEENN from imblearn.under_sampling import EditedNearestNeighbours #%% -# rs = {'random_state': 42} -# njobs = {'n_jobs': 10} +rs = {'random_state': 42} +njobs = {'n_jobs': 10} scoring_fn = ({ 'fscore' : make_scorer(f1_score) , 'mcc' : make_scorer(matthews_corrcoef) diff --git a/MultClassPipe3_CALL.py b/MultClassPipe3_CALL.py index c1d3808..c9e1032 100644 --- a/MultClassPipe3_CALL.py +++ b/MultClassPipe3_CALL.py @@ -8,6 +8,7 @@ Created on Tue Mar 15 11:09:50 2022 #%% Data X = all_df_wtgt[numerical_FN+categorical_FN] y = all_df_wtgt['mutation_class'] +#y = all_df_wtgt['dst_mode'] #%% variables #%% MultClassPipeSKFCV: function call() @@ -21,3 +22,4 @@ mm_skf_scores_df_all = pd.DataFrame(mm_skf_scoresD) mm_skf_scores_df_all mm_skf_scores_df_test = mm_skf_scores_df_all.filter(like='test_', axis=0) mm_skf_scores_df_train = mm_skf_scores_df_all.filter(like='train_', axis=0) # helps to see if you trust the results +] diff --git a/__pycache__/MultClassPipe2.cpython-37.pyc b/__pycache__/MultClassPipe2.cpython-37.pyc index 5812752..5241620 100644 Binary files a/__pycache__/MultClassPipe2.cpython-37.pyc and b/__pycache__/MultClassPipe2.cpython-37.pyc differ diff --git a/__pycache__/MultClassPipe3.cpython-37.pyc b/__pycache__/MultClassPipe3.cpython-37.pyc index c225213..5acf839 100644 Binary files a/__pycache__/MultClassPipe3.cpython-37.pyc and b/__pycache__/MultClassPipe3.cpython-37.pyc differ diff --git a/__pycache__/loopity_loop.cpython-37.pyc b/__pycache__/loopity_loop.cpython-37.pyc index 994b92f..6b2550b 100644 Binary files a/__pycache__/loopity_loop.cpython-37.pyc and b/__pycache__/loopity_loop.cpython-37.pyc differ diff --git a/imports.py b/imports.py index c6a2531..f0a0dfe 100644 --- a/imports.py +++ b/imports.py @@ -99,7 +99,6 @@ from MultClassPipe2 import MultClassPipeline2 from loopity_loop import MultClassPipeSKFLoop from MultClassPipe3 import MultClassPipeSKFCV - gene = 'pncA' drug = 'pyrazinamide'