22 lines
1.2 KiB
Bash
Executable file
22 lines
1.2 KiB
Bash
Executable file
#!/bin/sh
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#python /home/sportelli/Desktop/Important_Code/structural/aaindex/get_scores.py /home/sportelli/Desktop/Project_2_rpoB/leprae/RMLE_B_RFP.pdb C P28A
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#python /home/tanu/git/LSHTM_analysis/scripts/aa_index_scripts/aaindex/get_scores.py /home/tanu/git/LSHTM_analysis/scripts/aa_index_scripts/pnca_complex.pdb A L4S
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python /home/tanu/git/LSHTM_analysis/scripts/aa_index_scripts/aaindex/get_scores.py /home/tanu/git/Data/pyrazinamide/input/pnca_complex.pdb A L4S
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#----------------------
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# How I want it to run
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#---------------------
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#drug = "pyrazinamide"
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#gene = "pncA" # force it to be lowercase
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#chain = "A"
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#mutfile = "/home/tanu/git/Data/output/<gene>_mcsm_snps.csv"
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#mut = for i in mutfile
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#$1 = "/home/tanu/git/Data/input/<gene>_complex.pdb
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#$2 = chain
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#$3 = mut
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#python /home/tanu/git/LSHTM_analysis/scripts/aa_index_scripts/aaindex/get_scores.py $1 $2 $3
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#for i in $(cat /home/tanu/git/Data/pyrazinamide/output/*mcsm_snps*); do echo -n "${i}," >>/home/tanu/git/Data/pyrazinamide/output/aa_index/pnca_aa; python /home/tanu/git/LSHTM_analysis/scripts/aa_index_scripts/aaindex/get_scores.py /home/tanu/git/Data/pyrazinamide/input/pnca_complex.pdb A $i >> /home/tanu/git/Data/pyrazinamide/output/aa_index/pnca_aa; done
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