20 lines
533 B
Python
20 lines
533 B
Python
#!/usr/bin/python
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# hydrophobicity and SAA
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#https://biopython.org/DIST/docs/api/Bio.SeqUtils.ProtParamData-pysrc.html
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#https://jbloomlab.github.io/dms_tools2/dms_tools2.dssp.html
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import sys, os
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import pandas as pd
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import pprint as pp
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#import dms_tools2
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#import dms_tools2.dssp
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from Bio.SeqUtils import ProtParamData
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#%%
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homedir = os.path.expanduser('~') # spyder/python doesn't recognise tilde
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os.getcwd()
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os.chdir(homedir + '/git/LSHTM_analysis/meta_data_analysis/struct_params')
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os.getcwd()
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#%%
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foo = ProtParamData.kd(3pl1.pdb)
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