37 lines
No EOL
965 B
Python
Executable file
37 lines
No EOL
965 B
Python
Executable file
#!/usr/bin/env python3
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# -*- coding: utf-8 -*-
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"""
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Created on Fri Feb 12 12:15:26 2021
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@author: tanu
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"""
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#%% load packages
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import os
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homedir = os.path.expanduser('~')
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os.chdir (homedir + '/git/LSHTM_analysis/mcsm_na')
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from get_results_mcsm_na import *
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########################################################################
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# variables
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my_host = 'http://biosig.unimelb.edu.au'
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# TODO: add cmd line args
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#gene = 'gid'
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drug = 'streptomycin'
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datadir = homedir + '/git/Data'
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indir = datadir + '/' + drug + '/input'
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outdir = datadir + '/' + drug + '/output'
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#==========================
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# CALL: get_results()
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# Data: gid+streptomycin
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#==========================
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print('Downloading results for:', my_url_file, '\nsuffix:', my_suffix)
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get_results(url_file = my_url_file
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, host_url = my_host
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, output_dir = outdir
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, outfile_suffix = my_suffix)
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#%%##################################################################### |