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scratch_plots
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added scratch_plots/ggpairs_test.R to play with ggally for future
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2020-09-17 15:32:40 +01:00 |
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barplot_colour_function.R
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sorted subcols_axis script to generate correct axis cols for both PS and lig plots
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2020-08-26 16:39:10 +01:00 |
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barplots_subcolours_aa_combined.R
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added barplot_subcolours_aa_combined.R to combine and label these plots
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2020-10-06 18:43:20 +01:00 |
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barplots_subcolours_aa_LIG.R
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adjusted x axis position label for barplot_subcols_aa_LIG.R
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2020-10-06 18:42:24 +01:00 |
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barplots_subcolours_aa_PS.R
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adjusted x axis position label for barplot_subcols_aa_LIG.R
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2020-10-06 18:42:24 +01:00 |
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barplots_subcolours_PS.R
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sorted subcols_axis script to generate correct axis cols for both PS and lig plots
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2020-08-26 16:39:10 +01:00 |
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basic_barplots_combined.R
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added script basic_barplots_combined.R to combine basic barplots for PS and lig
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2020-09-18 18:09:24 +01:00 |
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basic_barplots_foldx.R
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added basic_barplots_foldx.R for supp figure
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2020-10-06 09:53:34 +01:00 |
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basic_barplots_LIG.R
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moved not required plots to scratch
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2020-10-06 09:52:54 +01:00 |
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basic_barplots_PS.R
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moved not required plots to scratch
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2020-10-06 09:52:54 +01:00 |
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combining_dfs_plotting.R
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write merged_df3 files from combining_dfs_plotting
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2020-09-11 09:51:53 +01:00 |
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combining_two_df_FIXME.R
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Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis
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2020-09-10 16:14:46 +01:00 |
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corr_adjusted_PS_LIG.R
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saving work
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2020-09-18 11:55:08 +01:00 |
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corr_data.R
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added corr_data.R corr_PS_LIG_all.R corr_PS_LIG_v2.R
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2020-09-29 16:08:25 +01:00 |
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corr_PS_LIG.R
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output corr plots with coloured dots
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2020-10-06 17:47:24 +01:00 |
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dirs.R
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updated dir.R
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2020-09-09 11:45:09 +01:00 |
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dist_plots_check.R
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renamed dist_plots.R to dist_plots_check.R as its exploratory
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2020-10-06 16:39:24 +01:00 |
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extreme_muts.R
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added more analysis in extreme_muts.R to be tidied later
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2020-09-23 19:23:34 +01:00 |
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ggcorr_all_PS_LIG.R
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added ggcorr all plot figure for supp
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2020-09-18 12:46:12 +01:00 |
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Header_TT.R
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updated Header file and saving work
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2020-09-17 20:12:08 +01:00 |
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hist_af_or_combined.R
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updated TASK in hist_af_or_combined.R
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2020-10-06 16:43:59 +01:00 |
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legend_adjustment.R
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updated gitignore and saving workk
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2020-09-10 14:45:10 +01:00 |
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lineage_basic_barplot.R
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generated lineage dist plots combined. needs tweaking
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2020-09-09 12:53:53 +01:00 |
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lineage_dist_combined_PS.R
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updated distribution scripts to try adding points
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2020-09-15 13:33:28 +01:00 |
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lineage_dist_dm_om_combined_PS.R
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added new layput for dm_om and facet_lineage plot
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2020-09-17 14:01:04 +01:00 |
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logo_combined.R
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saving work
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2020-09-18 18:07:48 +01:00 |
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logo_multiple_muts.R
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minor tweaks in logo and corr plots
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2020-09-17 20:00:34 +01:00 |
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logo_plot.R
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minor tweaks in logo and corr plots
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2020-09-17 20:00:34 +01:00 |
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mcsm_mean_stability.R
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sorted subcols_axis script to generate correct axis cols for both PS and lig plots
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2020-08-26 16:39:10 +01:00 |
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merged_df3_short.csv
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added merged_df3_short.csv for supp tables and struct figures
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2020-09-10 19:17:05 +01:00 |
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my_pairs_panel.R
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added plotting/corr_plots_style2.Radded my version of pairs.panel with lower panel turned off. Also added new script for corr plots using my version of pairs.panel
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2020-09-17 15:31:37 +01:00 |
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notes
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updated notes with supp table colnames
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2020-09-10 20:15:00 +01:00 |
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opp_mcsm_muts.R
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`resolved ambiguous muts and generated clean output. Also seaprated dir.R
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2020-09-09 11:26:13 +01:00 |
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or_plots_combined.R
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saving combined bubble plot with labels
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2020-09-18 18:19:55 +01:00 |
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other_plots.R
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saving work
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2020-09-18 18:07:48 +01:00 |
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other_plots_data.R
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added foldx scaled and foldx outcome to plotting_data.R
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2020-09-23 11:12:41 +01:00 |
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output_tables.R
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added extreme_muts.R
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2020-09-11 16:07:23 +01:00 |
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plotting_data.R
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added fold and duet agreement to extreme_muts.R
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2020-09-23 11:20:22 +01:00 |
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ps_plots_combined.R
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generated labelled ps_plots_combined.R and capital "P" for position in barplots coloured aa for Lig
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2020-10-06 18:15:50 +01:00 |
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replaceBfactor_pdb.R
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generated replaced Bfactor pdbs
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2020-08-24 14:37:28 +01:00 |
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resolving_ambiguous_muts.R
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add dirs and resolving_ambiguous_muts
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2020-09-09 11:36:40 +01:00 |
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running_plot_scripts
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lineage dist plots combined generated
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2020-09-09 13:18:57 +01:00 |
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subcols_axis.R
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renamed file to reflect sucols_axis is commons script sourced by ps and lig plots
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2020-08-26 16:40:36 +01:00 |
