97 lines
2.7 KiB
Text
97 lines
2.7 KiB
Text
==================================
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# BTS data: UQ
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# Features NOT including AA index
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# Date: 30/05/2022, but reran with active_site indication column that was added lateron
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# TODO: put in folder called v1, and UQ in folder called UQ_v0 (will need to rename!)
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=================================
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./pnca_config.py
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./embb_config.py
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./gid_config.py
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./katg_config.py
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./rpob_config.py
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## ./alr_config.py = NA
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# ^^^^^^^^ FIXME!
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########################################################################
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==================================
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# BTS data: imputed values
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# All features including AA index
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# Date: 16/05/2022
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=================================
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./pnca_config.py
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./embb_config.py
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./gid_config.py
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./katg_config.py
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./rpob_config.py
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##./alr_config.py = NA
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########################################################################
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=================================
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# Split: 70/30
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# All features including AA index
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# Date: 17/05/2022 and 18/05/2022
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# captures error: 2>$1
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=================================
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./pnca_7030.py
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./embb_7030.py
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# ./gid_7030.py: problems, CT values are non existing except for rouC
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./gid_7030.py 2>&1 | tee log_gid_7030.txt
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./katg_7030.py
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./rpob_7030.py
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##./alr_7030.py = NA
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########################################################################
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=================================
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# Split: 80/20
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# All features including AA index
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# Date: 17/05/2022, 18:48
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# captures error: 2>$1
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=================================
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./pnca_8020.py 2>&1 | tee log_pnca_8020.txt
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./embb_8020.py 2>&1 | tee log_embb_8020.txt
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./gid_8020.py 2>&1 | tee log_gid_8020.txt
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./katg_8020.py 2>&1 | tee log_katg_8020.txt
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./rpob_8020.py 2>&1 | tee log_rpob_8020.txt
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./alr_8020.py 2>&1 | tee log_alr_8020.txt
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########################################################################
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=================================
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# Split: scaling law
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# All features including AA index
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# Date: 17/05/2022, 18:48
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# captures error: 2>$1
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=================================
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./pnca_sl.py 2>&1 | tee log_pnca_sl.txt
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./embb_sl.py 2>&1 | tee log_embb_sl.txt
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./gid_sl.py 2>&1 | tee log_gid_sl.txt
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./katg_sl.py 2>&1 | tee log_katg_sl.txt
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./rpob_sl.py 2>&1 | tee log_rpob_sl.txt
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./alr_sl.py 2>&1 | tee log_alr_sl.txt
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########################################################################
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=================================
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# Split: Reverse training
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# imputed values: training set
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# actual values: blind set
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# All features including AA index
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# Date: 18/05/2022
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# captures error: 2>$1
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=================================
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./pnca_rt.py 2>&1 | tee log_pnca_rt.txt
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./embb_rt.py 2>&1 | tee log_embb_rt.txt
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./gid_rt.py 2>&1 | tee log_gid_rt.txt
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./katg_rt.py 2>&1 | tee log_katg_rt.txt
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./rpob_rt.py 2>&1 | tee log_rpob_rt.txt
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./alr_rt.py 2>&1 | tee log_alr_rt.txt
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