LSHTM_analysis/scripts/plotting/running_plotting_scripts.txt

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#########################################################################
#===================
# basic_barplot.R
#===================
It replaces
basic_barplot_PS.R
basic_barplot_LIG.R
basic_barplot_foldx.R
These have been moved to redundant/
sources:
## plotting_globals.R (previously dir.R)
## plotting_data.R
## position_count_bp.R
## stability_count_bp.R
outputs:
##5 svgs in the plotdir
note:
-f flag has default if not supplied
#-----------------------------------------------------------------------
./basic_barplots.R -d streptomycin -g gid -f /home/tanu/gid_test_file.csv
#-----------------------------------------------------------------------
########################################################################
# TODO
Delete: dirs.R
after grepping
barplots_subcolours_aa_combined.R:source("dirs.R")
basic_barplots_PS.R:source("dirs.R")
resolving_ambiguous_muts.R:source("dirs.R")
########################################################################