| .. |
|
barplot_colour_function.R
|
sorted subcols_axis script to generate correct axis cols for both PS and lig plots
|
2020-08-26 16:39:10 +01:00 |
|
barplots_subcolours_aa_LIG.R
|
all barplots generated for ps and lig
|
2020-08-26 17:18:45 +01:00 |
|
barplots_subcolours_aa_PS.R
|
saving work
|
2020-09-09 18:56:59 +01:00 |
|
barplots_subcolours_PS.R
|
sorted subcols_axis script to generate correct axis cols for both PS and lig plots
|
2020-08-26 16:39:10 +01:00 |
|
basic_barplots_LIG.R
|
all barplots generated for ps and lig
|
2020-08-26 17:18:45 +01:00 |
|
basic_barplots_PS.R
|
sorted subcols_axis script to generate correct axis cols for both PS and lig plots
|
2020-08-26 16:39:10 +01:00 |
|
combining_dfs_plotting.R
|
write merged_df3 files from combining_dfs_plotting
|
2020-09-11 09:51:53 +01:00 |
|
combining_two_df_FIXME.R
|
Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis
|
2020-09-10 16:14:46 +01:00 |
|
corr_plots.R
|
saving work after correlation plots
|
2020-09-09 20:56:07 +01:00 |
|
dirs.R
|
updated dir.R
|
2020-09-09 11:45:09 +01:00 |
|
extreme_muts.R
|
added extreme_muts.R
|
2020-09-11 16:07:23 +01:00 |
|
Header_TT.R
|
updated Header file with Logolas and ggseqlogo
|
2020-09-10 19:55:21 +01:00 |
|
legend_adjustment.R
|
updated gitignore and saving workk
|
2020-09-10 14:45:10 +01:00 |
|
lineage_basic_barplot.R
|
generated lineage dist plots combined. needs tweaking
|
2020-09-09 12:53:53 +01:00 |
|
lineage_dist_combined_PS.R
|
added correlation plots
|
2020-09-09 20:48:21 +01:00 |
|
logo_plot.R
|
updated logo plot data to source from combining_df_plotting.R
|
2020-09-10 19:58:33 +01:00 |
|
mcsm_mean_stability.R
|
sorted subcols_axis script to generate correct axis cols for both PS and lig plots
|
2020-08-26 16:39:10 +01:00 |
|
merged_df3_short.csv
|
added merged_df3_short.csv for supp tables and struct figures
|
2020-09-10 19:17:05 +01:00 |
|
notes
|
updated notes with supp table colnames
|
2020-09-10 20:15:00 +01:00 |
|
opp_mcsm_muts.R
|
`resolved ambiguous muts and generated clean output. Also seaprated dir.R
|
2020-09-09 11:26:13 +01:00 |
|
or_plots_combined.R
|
added correlation plots
|
2020-09-09 20:48:21 +01:00 |
|
other_plots.R
|
added delta symbol to plotting_data.R and pretty labels for dr_other_muts figure
|
2020-09-11 14:40:37 +01:00 |
|
other_plots_data.R
|
added delta symbol to plotting_data.R and pretty labels for dr_other_muts figure
|
2020-09-11 14:40:37 +01:00 |
|
output_tables.R
|
added extreme_muts.R
|
2020-09-11 16:07:23 +01:00 |
|
plotting_data.R
|
added delta symbol to plotting_data.R and pretty labels for dr_other_muts figure
|
2020-09-11 14:40:37 +01:00 |
|
ps_plots_combined.R
|
script to generate combined ps plot wit af and or
|
2020-09-09 18:57:28 +01:00 |
|
replaceBfactor_pdb.R
|
generated replaced Bfactor pdbs
|
2020-08-24 14:37:28 +01:00 |
|
resolving_ambiguous_muts.R
|
add dirs and resolving_ambiguous_muts
|
2020-09-09 11:36:40 +01:00 |
|
running_plot_scripts
|
lineage dist plots combined generated
|
2020-09-09 13:18:57 +01:00 |
|
subcols_axis.R
|
renamed file to reflect sucols_axis is commons script sourced by ps and lig plots
|
2020-08-26 16:40:36 +01:00 |
