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redundant
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added ed_pfm_data.R function and its corresponding test
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2022-01-26 11:55:38 +00:00 |
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tests
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various changes
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2022-03-02 11:44:04 +00:00 |
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aa_prop_bp.R
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added first line to all func to run from
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2021-06-24 10:02:14 +01:00 |
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bp_lineage.R
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various tweaks to make the RShiny dashboards work
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2022-04-28 20:21:03 +01:00 |
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bp_lineage_diversity.R
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lineage_dist: add all_lineages feature
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2022-03-06 13:31:43 +00:00 |
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bp_subcolours.R
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added placeholder defaults for functions in R to make sure that R shiny layput works with a data set for meeting tomorrow
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2022-02-14 19:33:00 +00:00 |
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combining_dfs_plotting.R
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lineage labels gsub now redundant in combining_dfs_plotting.R
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2022-05-05 19:31:00 +01:00 |
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consurfP.R
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various tweaks to make the RShiny dashboards work
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2022-04-28 20:21:03 +01:00 |
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corr_plot_data.R
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added function lineage_plot_data.R and corresponding test script, also renamed corr_plot_df.R to corr_plot_data and corresponing test script
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2022-02-01 16:25:58 +00:00 |
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dm_om_data.R
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updated docs for dm_om_data.R
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2022-02-01 16:23:03 +00:00 |
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ed_pfm_data.R
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updated docs for the logo functions and tested all of them again
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2022-01-26 15:53:53 +00:00 |
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lf_bp.R
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various tweaks to make the RShiny dashboards work
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2022-04-28 20:21:03 +01:00 |
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lf_unpaired_stats.R
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added function for stats from lf data
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2021-08-27 13:01:52 +01:00 |
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lineage_dist.R
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lineage_dist: add all_lineages feature
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2022-03-06 13:31:43 +00:00 |
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lineage_plot_data.R
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added function lineage_plot_data.R and corresponding test script, also renamed corr_plot_df.R to corr_plot_data and corresponing test script
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2022-02-01 16:25:58 +00:00 |
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logoP_msa.R
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combined msa and wt seq into 1 list so only list is passed as an arg for plotting ED plots
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2022-02-15 08:31:58 +00:00 |
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logoP_or.R
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combined msa and wt seq into 1 list so only list is passed as an arg for plotting ED plots
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2022-02-15 08:31:58 +00:00 |
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logoP_snp.R
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various tweaks to make the RShiny dashboards work
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2022-04-28 20:21:03 +01:00 |
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my_logolas.R
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tested edplot with alr gene
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2022-01-26 13:35:57 +00:00 |
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my_pairs_panel.R
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various tweaks to make the RShiny dashboards work
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2022-04-28 20:21:03 +01:00 |
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myaf_or_calcs.R
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added log10 OR and P values to myaf_or_calcs.R
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2021-08-23 20:01:01 +01:00 |
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mychisq_or.R
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added first line to all func to run from
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2021-06-24 10:02:14 +01:00 |
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plotting_data.R
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added additional check in combining_df_plotting.R to account for check when generating merged_df2 as muts NOT present in mcsm can create trouble, so fixed that and ran it successfully for alr and katg
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2022-01-18 17:36:54 +00:00 |
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plotting_globals.R
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going through functions and script for interactive plots
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2022-01-12 17:58:16 +00:00 |
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position_count_bp.R
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fixed pos_count cals in function by specifying dplyr and changed summarize to summarise
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2021-09-15 15:46:42 +01:00 |
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stability_count_bp.R
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various tweaks to make the RShiny dashboards work
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2022-04-28 20:21:03 +01:00 |
