71 lines
1.8 KiB
Text
71 lines
1.8 KiB
Text
#=============
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# merged_df2
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#=============
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----------------
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# no. of samples
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----------------
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Var1 Freq
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1 8
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2 lineage1 144
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3 lineage1;lineage2 3
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4 lineage1;lineage4 4
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5 lineage2 1886
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6 lineage2;lineage4 19
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7 lineage3 190
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8 lineage3;lineage4 11
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9 lineage4 2213
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10 lineage4;lineage6 1
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11 lineage4;lineage7 1
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12 lineage4;lineageBOV 1
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13 lineage5 31
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14 lineage6 9
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15 lineage7 3
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16 lineageBOV 392
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----------------
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# no. of nsSNPs
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----------------
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sel_lineages num_snps_u total_samples
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1 lineage1 74 144
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2 lineage2 277 1886
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3 lineage3 104 190
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4 lineage4 311 2213
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5 lineage5 18 31
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6 lineage6 8 9
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7 lineage7 1 3
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#=============
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# merged_df2_comp
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#=============
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----------------
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# no. of samples
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----------------
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Var1 Freq
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1 3
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2 lineage1 108
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3 lineage1;lineage2 2
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4 lineage1;lineage4 2
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5 lineage2 1497
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6 lineage2;lineage4 13
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7 lineage3 154
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8 lineage3;lineage4 3
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9 lineage4 1846
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10 lineage4;lineageBOV 1
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11 lineage5 12
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12 lineage6 2
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13 lineageBOV 36
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----------------
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# no. of nsSNPs
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----------------
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sel_lineages num_snps_u total_samples
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1 lineage1 42 108
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2 lineage2 141 1497
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3 lineage3 75 154
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4 lineage4 148 1846
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5 lineage5 9 12
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6 lineage6 2 2
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7 lineage7 0 0
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