19 lines
No EOL
911 B
R
19 lines
No EOL
911 B
R
#!/usr/bin/env Rscript
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#source("~/git/LSHTM_analysis/config/alr.R")
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#source("~/git/LSHTM_analysis/config/embb.R")
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source("~/git/LSHTM_analysis/config/gid.R")
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#source("~/git/LSHTM_analysis/config/katg.R")
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#source("~/git/LSHTM_analysis/config/pnca.R")
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#source("~/git/LSHTM_analysis/config/rpob.R")
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source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
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#####################################################################
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lineage_dfL = lineage_plot_data(df = merged_df2
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, lineage_column_name = "lineage"
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, remove_empty_lineage = F
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, lineage_label_col_name = "lineage_labels"
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, id_colname = "id"
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, snp_colname = "mutationinformation"
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)
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lin_wf = lineage_dfL[['lin_wf']]
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lin_lf = lineage_dfL[['lin_lf']] |