87 lines
2.2 KiB
Text
87 lines
2.2 KiB
Text
#########################################################################
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#===================
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# basic_barplot.R
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#===================
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It replaces
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basic_barplot_PS.R
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basic_barplot_LIG.R
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basic_barplot_foldx.R
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These have been moved to redundant/
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sources:
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## plotting_globals.R (previously dir.R)
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## plotting_data.R
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## position_count_bp.R
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## stability_count_bp.R
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outputs:
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## 5 svgs in the plotdir
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note:
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-f flag has default if not supplied
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#-----------------------------------------------------------------------
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./basic_barplots.R -d streptomycin -g gid -f /home/tanu/gid_test_file.csv
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#-----------------------------------------------------------------------
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#===================
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# log_plot.R
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#===================
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./logo_plot.R -d streptomycin -g gid
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sources:
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## plotting_globals.R (previously dir.R)
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## plotting_data.R
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## combining_dfs_plotting.R
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outputs: plotdir
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## 1 svg of OR for all positions
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note:
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-fa flag has default if not supplied
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-fb flag has default if not supplied
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#========================
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# ./logo_multiple_muts.R
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#========================
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./logo_multiple_muts.R -d streptomycin -g gid
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sources:
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## plotting_globals.R (previously dir.R)
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## plotting_data.R
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## combining_dfs_plotting.R
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outputs: plotdir
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## 1 svg of multiple muts for all positions > 1 muts (mutations + wt)
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note:
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- fa flag has default if not supplied
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- fb flag has default if not supplied
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- Error in grid.Call fixed by commenting out image rendering on console
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#========================
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# ./logo_combined.R
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#========================
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sources:
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## plotting_globals.R (previously dir.R)
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## plotting_data.R
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## combining_dfs_plotting.R
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outputs: plotdir
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## 1 svg combined of OR logo plot + mulitple_muts i.e output from
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'logo_plots.R' + 'logo_multiple_muts.R'
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note:
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- fa flag has default if not supplied
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- fb flag has default if not supplied
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- Error in grid.Call fixed by commenting out image rendering on console
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########################################################################
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# TODO
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Delete: dirs.R
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after grepping
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barplots_subcolours_aa_combined.R:source("dirs.R")
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basic_barplots_PS.R:source("dirs.R")
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resolving_ambiguous_muts.R:source("dirs.R")
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########################################################################
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