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README.md Update README.md 2020-01-14 11:22:41 +00:00

README.md

mCSM Analysis

This repo does mCSM analysis using bash, python and R.

Requires an additional 'Data' directory. Batteries not included:-)

Assumptions

  1. git repos are cloned to ~/git
  2. Requires a Data/ in ~/git which has the struc created by mk_drug_dirs.sh

LSHTM_analysis:

subdirs within this repo

 meta\_data\_analysis/
 	*.R
 	*.py
	
 mcsm\_analysis/
	<drug>/ (generated by `meta_data_analysis/pnca_data_extraction.py`. To be replaced with command line args or config option "soon")
		scripts/
		*.R
		*.py
			mcsm/
			*.sh
			*.py
			*.R
			plotting/
			*.R

More docs here as I write them.