LSHTM_analysis/mcsm_analysis/pyrazinamide/scripts/mcsm/run.sh

6 lines
209 B
Bash
Executable file

# run step0-step3a for mcsm pipeline
#./step0_check_duplicate_SNPs.sh
#./step1_mCSMLig_curl_submit_store_outputurl.sh
./step2_mCSM_LIG_batch_outputurls_results.sh
./step3a_mCSM_LIG_regex_output_formatting.sh