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myshiny
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added the almost done shiny for barplots subcolours
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2021-06-30 17:20:04 +01:00 |
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redundant
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moved coloured_bp_data.R to redundant in light of updated function and reflected this in notes withing get_plotting_dfs.R
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2021-09-15 19:42:08 +01:00 |
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scratch_plots
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added scratch_plots/ggpairs_test.R to play with ggally for future
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2020-09-17 15:32:40 +01:00 |
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barplots_subcolours.R
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updated running_plotting_scripts.R
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2021-09-07 11:16:41 +01:00 |
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barplots_subcolours_aa_combined.R
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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barplots_subcolours_aa_LIG.R
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renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it.
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2021-06-29 14:05:48 +01:00 |
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barplots_subcolours_aa_PS.R
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added the almost done shiny for barplots subcolours
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2021-06-30 17:20:04 +01:00 |
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basic_barplots.R
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fixed cmd running script problem for logo plots
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2021-06-24 12:12:36 +01:00 |
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basic_barplots_combined.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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corr_adjusted_PS_LIG.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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corr_data.R
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added pretty colnames to corr_data.R
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2021-09-13 10:24:41 +01:00 |
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corr_plots.R
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added corr_plots.R to generate corr plots by adding source data in get_plotting_dfs.R and tested with cmd
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2021-06-28 17:27:50 +01:00 |
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dirs.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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dist_plots_check.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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dm_om_data.R
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added shorter scripts for each different processing for plots to make it wasire to read code
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2021-09-10 18:20:45 +01:00 |
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extreme_muts.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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get_plotting_dfs.R
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saving work for logo plots
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2022-01-13 18:53:47 +00:00 |
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get_plotting_dfs_with_lig.R
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updated running_plotting_scripts.R
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2021-09-07 11:16:41 +01:00 |
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ggcorr_all_PS_LIG.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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Header_TT.R
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going through functions and script for interactive plots
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2022-01-12 17:58:16 +00:00 |
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hist_af_or_base.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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hist_af_or_combined.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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legend_adjustment.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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lineage_basic_barplot.R
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added untracked files in scripts/plotting
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2022-01-04 12:27:25 +00:00 |
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lineage_basic_barplots_combined.R
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added lineage_labels and mutation_info_labels to combinig_dfs_plotting
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2021-09-09 16:10:11 +01:00 |
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lineage_data.R
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added foldx_scaled and deepddg_scaled values added to combine_df.py and also used that script to merge all the dfs so that merged_df2 and merged_df3 are infact what we need for downstream processing
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2021-09-10 16:58:36 +01:00 |
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lineage_dist_combined_PS.R
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added untracked files in scripts/plotting
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2022-01-04 12:27:25 +00:00 |
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lineage_dist_dm_om_combined_PS.R
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added untracked files in scripts/plotting
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2022-01-04 12:27:25 +00:00 |
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lineage_dist_plots.R
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added foldx_scaled and deepddg_scaled values added to combine_df.py and also used that script to merge all the dfs so that merged_df2 and merged_df3 are infact what we need for downstream processing
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2021-09-10 16:58:36 +01:00 |
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logo_data.R
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saving work for logo plots
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2022-01-13 18:53:47 +00:00 |
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logo_plots.R
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saving work for logo plots
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2022-01-13 18:53:47 +00:00 |
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mcsm_mean_stability.R
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sorted subcols_axis script to generate correct axis cols for both PS and lig plots
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2020-08-26 16:39:10 +01:00 |
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notes
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updated notes with supp table colnames
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2020-09-10 20:15:00 +01:00 |
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opp_mcsm_muts.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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or_plots_combined.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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other_plots_combined.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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other_plots_data.R
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added untracked files in scripts/plotting
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2022-01-04 12:27:25 +00:00 |
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output_tables.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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ps_plots_combined.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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replaceBfactor_pdb.R
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generated replaced Bfactor pdbs
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2020-08-24 14:37:28 +01:00 |
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resolving_ambiguous_muts.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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running_plot_scripts
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lineage dist plots combined generated
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2020-09-09 13:18:57 +01:00 |
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running_plotting_scripts.txt
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updated notes
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2021-09-07 11:18:10 +01:00 |
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subcols_axis.R
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generated pncA plot for poster for ps_combined
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2021-07-07 11:38:07 +01:00 |
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TESTING_PLOTS.R
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added TESTING_plots.R
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2021-11-09 13:55:21 +00:00 |
