Tanushree Tunstall 478df927cc horrible lineage analysis hell		2022-06-28 21:51:02 +01:00
..
redundant	added ed_pfm_data.R function and its corresponding test	2022-01-26 11:55:38 +00:00
tests	various changes	2022-03-02 11:44:04 +00:00
aa_prop_bp.R	added first line to all func to run from	2021-06-24 10:02:14 +01:00
bp_lineage.R	various tweaks to make the RShiny dashboards work	2022-04-28 20:21:03 +01:00
bp_lineage_diversity.R	lineage_dist: add all_lineages feature	2022-03-06 13:31:43 +00:00
bp_subcolours.R	added placeholder defaults for functions in R to make sure that R shiny layput works with a data set for meeting tomorrow	2022-02-14 19:33:00 +00:00
combining_dfs_plotting.R	horrible lineage analysis hell	2022-06-28 21:51:02 +01:00
consurfP.R	various tweaks to make the RShiny dashboards work	2022-04-28 20:21:03 +01:00
corr_plot_data.R	added function lineage_plot_data.R and corresponding test script, also renamed corr_plot_df.R to corr_plot_data and corresponing test script	2022-02-01 16:25:58 +00:00
dm_om_data.R	updated docs for dm_om_data.R	2022-02-01 16:23:03 +00:00
ed_pfm_data.R	updated docs for the logo functions and tested all of them again	2022-01-26 15:53:53 +00:00
lf_bp.R	lf	2022-05-25 23:44:13 +01:00
lf_unpaired_stats.R	added function for stats from lf data	2021-08-27 13:01:52 +01:00
lineage_dist.R	lineage_dist: add all_lineages feature	2022-03-06 13:31:43 +00:00
lineage_plot_data.R	added function lineage_plot_data.R and corresponding test script, also renamed corr_plot_df.R to corr_plot_data and corresponing test script	2022-02-01 16:25:58 +00:00
logoP_msa.R	combined msa and wt seq into 1 list so only list is passed as an arg for plotting ED plots	2022-02-15 08:31:58 +00:00
logoP_or.R	combined msa and wt seq into 1 list so only list is passed as an arg for plotting ED plots	2022-02-15 08:31:58 +00:00
logoP_snp.R	various tweaks to make the RShiny dashboards work	2022-04-28 20:21:03 +01:00
my_logolas.R	tested edplot with alr gene	2022-01-26 13:35:57 +00:00
my_pairs_panel.R	various tweaks to make the RShiny dashboards work	2022-04-28 20:21:03 +01:00
myaf_or_calcs.R	added log10 OR and P values to myaf_or_calcs.R	2021-08-23 20:01:01 +01:00
mychisq_or.R	added first line to all func to run from	2021-06-24 10:02:14 +01:00
plotting_data.R	added additional check in combining_df_plotting.R to account for check when generating merged_df2 as muts NOT present in mcsm can create trouble, so fixed that and ran it successfully for alr and katg	2022-01-18 17:36:54 +00:00
plotting_globals.R	going through functions and script for interactive plots	2022-01-12 17:58:16 +00:00
position_count_bp.R	fixed pos_count cals in function by specifying dplyr and changed summarize to summarise	2021-09-15 15:46:42 +01:00
stability_count_bp.R	various tweaks to make the RShiny dashboards work	2022-04-28 20:21:03 +01:00