Tanushree Tunstall 3b7cea3c47 adding legend forlogo plot		2022-01-14 10:18:01 +00:00
..
myshiny	added the almost done shiny for barplots subcolours	2021-06-30 17:20:04 +01:00
redundant	moved coloured_bp_data.R to redundant in light of updated function and reflected this in notes withing get_plotting_dfs.R	2021-09-15 19:42:08 +01:00
scratch_plots	added scratch_plots/ggpairs_test.R to play with ggally for future	2020-09-17 15:32:40 +01:00
barplots_subcolours.R	updated running_plotting_scripts.R	2021-09-07 11:16:41 +01:00
barplots_subcolours_aa_combined.R	changing labels in graphs for frontiers journal	2020-10-09 13:10:08 +01:00
barplots_subcolours_aa_LIG.R	renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it.	2021-06-29 14:05:48 +01:00
barplots_subcolours_aa_PS.R	added the almost done shiny for barplots subcolours	2021-06-30 17:20:04 +01:00
basic_barplots.R	fixed cmd running script problem for logo plots	2021-06-24 12:12:36 +01:00
basic_barplots_combined.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
corr_adjusted_PS_LIG.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
corr_data.R	added pretty colnames to corr_data.R	2021-09-13 10:24:41 +01:00
corr_plots.R	added corr_plots.R to generate corr plots by adding source data in get_plotting_dfs.R and tested with cmd	2021-06-28 17:27:50 +01:00
dirs.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
dist_plots_check.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
dm_om_data.R	added shorter scripts for each different processing for plots to make it wasire to read code	2021-09-10 18:20:45 +01:00
extreme_muts.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
get_plotting_dfs.R	saving work for logo plots	2022-01-13 18:53:47 +00:00
get_plotting_dfs_with_lig.R	updated running_plotting_scripts.R	2021-09-07 11:16:41 +01:00
ggcorr_all_PS_LIG.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
Header_TT.R	going through functions and script for interactive plots	2022-01-12 17:58:16 +00:00
hist_af_or_base.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
hist_af_or_combined.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
legend_adjustment.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
lineage_basic_barplot.R	added untracked files in scripts/plotting	2022-01-04 12:27:25 +00:00
lineage_basic_barplots_combined.R	added lineage_labels and mutation_info_labels to combinig_dfs_plotting	2021-09-09 16:10:11 +01:00
lineage_data.R	added foldx_scaled and deepddg_scaled values added to combine_df.py and also used that script to merge all the dfs so that merged_df2 and merged_df3 are infact what we need for downstream processing	2021-09-10 16:58:36 +01:00
lineage_dist_combined_PS.R	added untracked files in scripts/plotting	2022-01-04 12:27:25 +00:00
lineage_dist_dm_om_combined_PS.R	added untracked files in scripts/plotting	2022-01-04 12:27:25 +00:00
lineage_dist_plots.R	added foldx_scaled and deepddg_scaled values added to combine_df.py and also used that script to merge all the dfs so that merged_df2 and merged_df3 are infact what we need for downstream processing	2021-09-10 16:58:36 +01:00
logo_data.R	saving work for logo plots	2022-01-13 18:53:47 +00:00
logo_plots.R	adding legend forlogo plot	2022-01-14 10:18:01 +00:00
mcsm_mean_stability.R	sorted subcols_axis script to generate correct axis cols for both PS and lig plots	2020-08-26 16:39:10 +01:00
notes	updated notes with supp table colnames	2020-09-10 20:15:00 +01:00
opp_mcsm_muts.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
or_plots_combined.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
other_plots_combined.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
other_plots_data.R	added untracked files in scripts/plotting	2022-01-04 12:27:25 +00:00
output_tables.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
ps_plots_combined.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
replaceBfactor_pdb.R	generated replaced Bfactor pdbs	2020-08-24 14:37:28 +01:00
resolving_ambiguous_muts.R	handled rpob 5uhc position offset in mcsm_ppi2	2022-01-04 10:45:29 +00:00
running_plot_scripts	lineage dist plots combined generated	2020-09-09 13:18:57 +01:00
running_plotting_scripts.txt	updated notes	2021-09-07 11:18:10 +01:00
subcols_axis.R	generated pncA plot for poster for ps_combined	2021-07-07 11:38:07 +01:00
TESTING_PLOTS.R	added TESTING_plots.R	2021-11-09 13:55:21 +00:00