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LSHTM_analysis/scripts
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Tanushree Tunstall 27a656dba1 added commonly used mutation format for missense muts in the gene_specific nssnp_info file
2020-06-24 13:34:35 +01:00
..
pdbtools@881ff8f27a building script for inspecting pdb 2020-05-22 11:57:59 +01:00
scratch added scratch/ 2020-05-22 12:03:11 +01:00
af_or_calcs.R script for calcuating various OR & output csv 2020-06-23 13:07:29 +01:00
align.py added script for pairwise alignment 2020-05-15 17:58:14 +01:00
chain_extract.py script for saving pdb chains in single file 2020-05-15 13:44:57 +01:00
chain_splitter.py added pdb_chain splitter code and wrapper 2020-05-13 16:54:20 +01:00
combine_afs_ors.py combined and output all ors 2020-06-23 17:34:54 +01:00
combine_dfs.py script to combine all ors 2020-06-19 14:43:23 +01:00
commandArgs-example.r getopt and commandArgs examples, and AF/OR update to use getopt() 2020-06-18 17:59:28 +01:00
data_extraction.py ran struc param analysis 2020-06-17 19:36:02 +01:00
dssp_df.py ran struc param analysis 2020-06-17 19:36:02 +01:00
find_missense.py script to combine ors and afs 2020-06-22 13:07:26 +01:00
getopt-example.r getopt and commandArgs examples, and AF/OR update to use getopt() 2020-06-18 17:59:28 +01:00
kd_df.py ran struc param analysis 2020-06-17 19:36:02 +01:00
nssnp_info_format.py added commonly used mutation format for missense muts in the gene_specific nssnp_info file 2020-06-24 13:34:35 +01:00
or_kinship_link.py added commonly used mutation format for missense muts in the gene_specific nssnp_info file 2020-06-24 13:34:35 +01:00
pdb_align.py added script for pairwise alignment 2020-05-15 17:58:14 +01:00
pdb_chain_extract.py tidy up code 2020-05-15 13:48:50 +01:00
pdb_chain_splitter.py tidy up code 2020-05-15 13:48:50 +01:00
pdbtools_commands various debug, doc, and args 2020-05-25 14:27:25 +01:00
pipeline.ini inlcuded the revised master file for 35k isolates 2020-06-16 11:39:11 +01:00
rd_df.py ran struc param analysis 2020-06-17 19:36:02 +01:00
reference_dict.py added commonly used mutation format for missense muts in the gene_specific nssnp_info file 2020-06-24 13:34:35 +01:00