18 lines
817 B
Bash
Executable file
18 lines
817 B
Bash
Executable file
#python /home/sportelli/Desktop/Important_Code/structural/aaindex/get_scores.py /home/sportelli/Desktop/Project_2_rpoB/leprae/RMLE_B_RFP.pdb C P28A
|
|
#python /home/tanu/git/LSHTM_analysis/scripts/aa_index_scripts/aaindex/get_scores.py /home/tanu/git/LSHTM_analysis/scripts/aa_index_scripts/pnca_complex.pdb A L4S
|
|
python /home/tanu/git/LSHTM_analysis/scripts/aa_index_scripts/aaindex/get_scores.py /home/tanu/git/Data/pyrazinamide/input/pnca_complex.pdb A L4S
|
|
|
|
# How I want it to run
|
|
#drug = "pyrazinamide"
|
|
#gene = "pncA" # force it to be lowercase
|
|
#chain = "A"
|
|
#mutfile = "/home/tanu/git/Data/output/<gene>_mcsm_snps.csv"
|
|
#mut = for i in mutfile
|
|
|
|
|
|
#$1 = "/home/tanu/git/Data/input/<gene>_complex.pdb
|
|
#$2 = chain
|
|
#$3 = mut
|
|
|
|
#python /home/tanu/git/LSHTM_analysis/scripts/aa_index_scripts/aaindex/get_scores.py $1 $2 $3
|
|
|