| .. |
|
myshiny
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
redundant
|
moved old dm_om_data_nf to redundant/
|
2022-01-31 17:52:29 +00:00 |
|
scratch_plots
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
structure_figures
|
moved code for structure figure to sep sir
|
2022-08-03 21:33:19 +01:00 |
|
barplots_subcolours.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
barplots_subcolours_aa_combined.R
|
changing labels in graphs for frontiers journal
|
2020-10-09 13:10:08 +01:00 |
|
barplots_subcolours_aa_LIG.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
barplots_subcolours_aa_PS.R
|
added hbond residues in config for all genes
|
2022-02-09 15:59:18 +00:00 |
|
basic_barplots.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
basic_barplots_combined.R
|
handled rpob 5uhc position offset in mcsm_ppi2
|
2022-01-04 10:45:29 +00:00 |
|
corr_adjusted_PS_LIG.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
corr_plots.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
dirs.R
|
handled rpob 5uhc position offset in mcsm_ppi2
|
2022-01-04 10:45:29 +00:00 |
|
dist_plots_check.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
dm_om_data.R
|
tested dm_om_data function with alr gene to make sure valid dfs are being returned
|
2022-01-31 17:50:12 +00:00 |
|
extreme_muts.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
get_plotting_dfs.R
|
reran to generate merged_df3 with correct dst for dst muts. modified combining_dfs_plotting.R
|
2022-07-08 21:33:57 +01:00 |
|
get_plotting_dfs_with_lig.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
ggcorr_all_PS_LIG.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
hist_af_or_base.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
hist_af_or_combined.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
legend_adjustment.R
|
handled rpob 5uhc position offset in mcsm_ppi2
|
2022-01-04 10:45:29 +00:00 |
|
LINEAGE.R
|
added TODO for lineage2.R
|
2022-06-29 10:26:08 +01:00 |
|
LINEAGE2.R
|
added plots for thesis
|
2022-08-03 21:32:55 +01:00 |
|
lineage_basic_barplot.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
lineage_basic_barplots_combined.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
lineage_data.R
|
added foldx_scaled and deepddg_scaled values added to combine_df.py and also used that script to merge all the dfs so that merged_df2 and merged_df3 are infact what we need for downstream processing
|
2021-09-10 16:58:36 +01:00 |
|
lineage_dist_combined_PS.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
lineage_dist_dm_om_combined_PS.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
lineage_dist_plots.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
lineage_plots_multipage.R
|
ML scripts: {'n_jobs': os.cpu_count() }
|
2022-07-02 10:22:07 +01:00 |
|
logo_data_msa.R
|
combined msa and wt seq into 1 list so only list is passed as an arg for plotting ED plots
|
2022-02-15 08:31:58 +00:00 |
|
logo_plots.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
notes
|
updated notes with supp table colnames
|
2020-09-10 20:15:00 +01:00 |
|
opp_mcsm_muts.R
|
handled rpob 5uhc position offset in mcsm_ppi2
|
2022-01-04 10:45:29 +00:00 |
|
or_plots_combined.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
other_plots_combined.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
other_plots_data.R
|
repurposing corr_data.R into a function to allow required params to be passed in
|
2022-01-29 17:24:15 +00:00 |
|
output_tables.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
ps_plots_combined.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
|
resolving_ambiguous_muts.R
|
handled rpob 5uhc position offset in mcsm_ppi2
|
2022-01-04 10:45:29 +00:00 |
|
running_plot_scripts
|
lineage dist plots combined generated
|
2020-09-09 13:18:57 +01:00 |
|
running_plotting_scripts.txt
|
updated notes
|
2021-09-07 11:18:10 +01:00 |
|
subcols_axis.R
|
generated pncA plot for poster for ps_combined
|
2021-07-07 11:38:07 +01:00 |
|
TESTING_PLOTS.R
|
wholesale change for Header_TT.R location
|
2022-01-26 11:39:03 +00:00 |
