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myshiny
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added the almost done shiny for barplots subcolours
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2021-06-30 17:20:04 +01:00 |
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redundant
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adde format_results_dynamut2.py and ran shiny scripts for barplots
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2021-08-19 16:25:38 +01:00 |
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scratch_plots
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added scratch_plots/ggpairs_test.R to play with ggally for future
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2020-09-17 15:32:40 +01:00 |
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barplots_subcolours.R
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reran plots with current lig dist
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2021-06-30 17:35:57 +01:00 |
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barplots_subcolours_aa_combined.R
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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barplots_subcolours_aa_LIG.R
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renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it.
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2021-06-29 14:05:48 +01:00 |
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barplots_subcolours_aa_PS.R
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added the almost done shiny for barplots subcolours
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2021-06-30 17:20:04 +01:00 |
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basic_barplots.R
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fixed cmd running script problem for logo plots
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2021-06-24 12:12:36 +01:00 |
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basic_barplots_combined.R
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renamed other_plots.R to other_plots_combined.R and changing labels to capital letters for journal
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2020-10-09 12:17:24 +01:00 |
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corr_adjusted_PS_LIG.R
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saving work
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2020-09-18 11:55:08 +01:00 |
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corr_plots.R
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added corr_plots.R to generate corr plots by adding source data in get_plotting_dfs.R and tested with cmd
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2021-06-28 17:27:50 +01:00 |
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dirs.R
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minor updates to dir.R
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2021-06-04 15:05:52 +01:00 |
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dist_plots_check.R
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renamed dist_plots.R to dist_plots_check.R as its exploratory
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2020-10-06 16:39:24 +01:00 |
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extreme_muts.R
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saving work minor changes perhaps
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2020-10-08 16:03:12 +01:00 |
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get_plotting_dfs.R
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added corr plots as function for interactive graphs on shiny
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2021-08-20 18:52:47 +01:00 |
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ggcorr_all_PS_LIG.R
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updated counts.py with wt seq counts
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2021-03-03 11:54:48 +00:00 |
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Header_TT.R
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fixed cmd running script problem for logo plots
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2021-06-24 12:12:36 +01:00 |
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hist_af_or_base.R
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added base histogram script for af and or
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2020-10-13 13:38:17 +01:00 |
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hist_af_or_combined.R
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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legend_adjustment.R
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updated gitignore and saving workk
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2020-09-10 14:45:10 +01:00 |
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lineage_basic_barplot.R
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generated lineage dist plots combined. needs tweaking
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2020-09-09 12:53:53 +01:00 |
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lineage_dist_combined_PS.R
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updated distribution scripts to try adding points
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2020-09-15 13:33:28 +01:00 |
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lineage_dist_dm_om_combined_PS.R
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saving work and generating revised_figure7
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2021-02-20 16:17:38 +00:00 |
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logo_plots.R
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added logo_plots.R that now produces all logo plots while sourcing the get_plotting_df.R script
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2021-06-24 17:34:53 +01:00 |
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mcsm_mean_stability.R
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sorted subcols_axis script to generate correct axis cols for both PS and lig plots
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2020-08-26 16:39:10 +01:00 |
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notes
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updated notes with supp table colnames
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2020-09-10 20:15:00 +01:00 |
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opp_mcsm_muts.R
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`resolved ambiguous muts and generated clean output. Also seaprated dir.R
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2020-09-09 11:26:13 +01:00 |
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or_plots_combined.R
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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other_plots_combined.R
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updated count.py with indel and stop codon count
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2021-02-24 09:56:36 +00:00 |
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other_plots_data.R
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added foldx scaled and foldx outcome to plotting_data.R
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2020-09-23 11:12:41 +01:00 |
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output_tables.R
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added extreme_muts.R
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2020-09-11 16:07:23 +01:00 |
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ps_plots_combined.R
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generated pncA plot for poster for ps_combined
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2021-07-07 11:38:07 +01:00 |
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replaceBfactor_pdb.R
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generated replaced Bfactor pdbs
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2020-08-24 14:37:28 +01:00 |
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resolving_ambiguous_muts.R
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add dirs and resolving_ambiguous_muts
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2020-09-09 11:36:40 +01:00 |
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running_plot_scripts
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lineage dist plots combined generated
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2020-09-09 13:18:57 +01:00 |
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running_plotting_scripts.txt
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moved barplot_colour_function.R to functions
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2021-06-29 13:58:22 +01:00 |
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subcols_axis.R
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generated pncA plot for poster for ps_combined
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2021-07-07 11:38:07 +01:00 |
