130 lines
2.5 KiB
R
130 lines
2.5 KiB
R
#########################################################
|
|
### A) Installing and loading required packages
|
|
#########################################################
|
|
#lib_loc = "/usr/local/lib/R/site-library")
|
|
|
|
#if (!require("gplots")) {
|
|
# install.packages("gplots", dependencies = TRUE)
|
|
# library(gplots)
|
|
#}
|
|
|
|
#if (!require("tidyverse")) {
|
|
# install.packages("tidyverse", dependencies = TRUE)
|
|
# library(tidyverse)
|
|
#}
|
|
|
|
if (!require("ggplot2")) {
|
|
install.packages("ggplot2", dependencies = TRUE)
|
|
library(ggplot2)
|
|
}
|
|
|
|
if (!require("plotly")) {
|
|
install.packages("plotly", dependencies = TRUE)
|
|
library(plotly)
|
|
}
|
|
|
|
if (!require("cowplot")) {
|
|
install.packages("copwplot", dependencies = TRUE)
|
|
library(cowplot)
|
|
}
|
|
|
|
if (!require("ggcorrplot")) {
|
|
install.packages("ggcorrplot", dependencies = TRUE)
|
|
library(ggcorrplot)
|
|
}
|
|
|
|
if (!require("ggpubr")) {
|
|
install.packages("ggpubr", dependencies = TRUE)
|
|
library(ggpubr)
|
|
}
|
|
|
|
if (!require("RColorBrewer")) {
|
|
install.packages("RColorBrewer", dependencies = TRUE)
|
|
library(RColorBrewer)
|
|
}
|
|
|
|
if (!require ("GOplot")) {
|
|
install.packages("GOplot")
|
|
library(GOplot)
|
|
}
|
|
|
|
if(!require("VennDiagram")) {
|
|
install.packages("VennDiagram", dependencies = T)
|
|
library(VennDiagram)
|
|
}
|
|
|
|
if(!require("scales")) {
|
|
install.packages("scales", dependencies = T)
|
|
library(scales)
|
|
}
|
|
|
|
if(!require("plotrix")) {
|
|
install.packages("plotrix", dependencies = T)
|
|
library(plotrix)
|
|
}
|
|
|
|
if(!require("stats")) {
|
|
install.packages("stats", dependencies = T)
|
|
library(stats)
|
|
}
|
|
|
|
if(!require("stats4")) {
|
|
install.packages("stats4", dependencies = T)
|
|
library(stats4)
|
|
}
|
|
|
|
if(!require("data.table")) {
|
|
install.packages("data.table")
|
|
library(data.table)
|
|
}
|
|
|
|
if (!require("PerformanceAnalytics")){
|
|
install.packages("PerformanceAnalytics", dependencies = T)
|
|
library(PerformaceAnalytics)
|
|
}
|
|
|
|
if (!require ("GGally")){
|
|
install.packages("GGally")
|
|
library(GGally)
|
|
}
|
|
|
|
if (!require ("corrr")){
|
|
install.packages("corrr")
|
|
library(corrr)
|
|
}
|
|
|
|
if (!require ("psych")){
|
|
install.packages("psych")
|
|
library(psych)
|
|
}
|
|
|
|
if (!require ("dplyr")){
|
|
install.packages("dplyr")
|
|
library(dplyr)
|
|
}
|
|
|
|
if (!require ("compare")){
|
|
install.packages("compare")
|
|
library(compare)
|
|
}
|
|
|
|
if (!require ("arsenal")){
|
|
install.packages("arsenal")
|
|
library(arsenal)
|
|
}
|
|
|
|
|
|
####TIDYVERSE
|
|
# Install
|
|
#if(!require(devtools)) install.packages("devtools")
|
|
#devtools::install_github("kassambara/ggcorrplot")
|
|
|
|
library(ggcorrplot)
|
|
|
|
|
|
###for PDB files
|
|
#install.packages("bio3d")
|
|
if(!require(bio3d)){
|
|
install.packages("bio3d")
|
|
library(bio3d)
|
|
}
|