LSHTM_analysis/scripts/functions
2023-02-27 20:02:10 +00:00
..
redundant addded old script to redundant 2022-08-10 14:08:23 +01:00
tests fix HARDCODED HOMEDIRS 2023-02-19 18:01:03 +00:00
aa_prop_bp.R added first line to all func to run from 2021-06-24 10:02:14 +01:00
bp_lineage.R SNP -> SAV for thesis plots 2023-02-19 17:43:22 +00:00
bp_lineage_diversity.R SNP -> SAV for thesis plots 2023-02-19 17:43:22 +00:00
bp_subcolours.R bugfixes 2023-02-27 20:02:10 +00:00
combining_dfs_plotting.R ml df stuff 2022-09-01 11:39:11 +01:00
consurfP.R fix some derps 2022-08-04 13:46:52 +01:00
corr_plot_data.R added rpob plot scripts 2022-08-29 23:27:13 +01:00
dashboard_ggpairs.R tweaks 2022-09-02 09:52:11 +01:00
dm_om_data.R added rpob plot scripts 2022-08-29 23:27:13 +01:00
ed_pfm_data.R SNP -> SAV for thesis plots 2023-02-19 17:43:22 +00:00
generate_distance_colour_map.R config: add tile stuff for all targets. Other functions: many rewrites! 2022-08-15 20:39:59 +01:00
lf_bp.R tweaks 2022-09-02 09:52:11 +01:00
lf_bp2.R remove empty LF files 2022-10-11 14:19:39 +01:00
lf_unpaired_stats.R reflected the factor thing as been added as new additon 2022-08-05 20:00:04 +01:00
lineage_dist.R various bugfixes 2022-09-07 20:03:58 +01:00
lineage_plot_data.R SNP -> SAV for thesis plots 2023-02-19 17:43:22 +00:00
logoP_msa.R SNP -> SAV for thesis plots 2023-02-19 17:43:22 +00:00
logoP_or.R plot function fixes for position tiles 2022-09-06 17:06:01 +01:00
logoP_snp.R tweaks to thesis figs 2023-02-24 22:38:37 +00:00
my_logolas.R tested edplot with alr gene 2022-01-26 13:35:57 +00:00
my_pairs_panel.R multiple script updates and bug fixes 2022-08-04 16:48:31 +01:00
myaf_or_calcs.R added log10 OR and P values to myaf_or_calcs.R 2021-08-23 20:01:01 +01:00
mychisq_or.R added first line to all func to run from 2021-06-24 10:02:14 +01:00
plotting_data.R fix directory assumption 2022-08-25 18:02:25 +01:00
plotting_globals.R table generator 2023-02-23 21:04:58 +00:00
position_annotation.R bugfixes 2023-02-27 20:02:10 +00:00
position_count_bp.R SNP -> SAV for thesis plots 2023-02-19 17:43:22 +00:00
stability_count_bp.R SNP -> SAV for thesis plots 2023-02-19 17:43:22 +00:00
wideP_consurf.R various plots 2022-08-10 11:06:13 +01:00
wideP_consurf3.R plot function fixes for position tiles 2022-09-06 17:06:01 +01:00