| .. |
|
myshiny
|
added the almost done shiny for barplots subcolours
|
2021-06-30 17:20:04 +01:00 |
|
redundant
|
moved coloured_bp_data.R to redundant in light of updated function and reflected this in notes withing get_plotting_dfs.R
|
2021-09-15 19:42:08 +01:00 |
|
scratch_plots
|
added scratch_plots/ggpairs_test.R to play with ggally for future
|
2020-09-17 15:32:40 +01:00 |
|
barplots_subcolours.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
barplots_subcolours_aa_combined.R
|
changing labels in graphs for frontiers journal
|
2020-10-09 13:10:08 +01:00 |
|
barplots_subcolours_aa_LIG.R
|
renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it.
|
2021-06-29 14:05:48 +01:00 |
|
barplots_subcolours_aa_PS.R
|
added the almost done shiny for barplots subcolours
|
2021-06-30 17:20:04 +01:00 |
|
basic_barplots.R
|
fixed cmd running script problem for logo plots
|
2021-06-24 12:12:36 +01:00 |
|
basic_barplots_combined.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
corr_adjusted_PS_LIG.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
corr_data.R
|
added pretty colnames to corr_data.R
|
2021-09-13 10:24:41 +01:00 |
|
corr_plots.R
|
added corr_plots.R to generate corr plots by adding source data in get_plotting_dfs.R and tested with cmd
|
2021-06-28 17:27:50 +01:00 |
|
dirs.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
dist_plots_check.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
dm_om_data.R
|
added shorter scripts for each different processing for plots to make it wasire to read code
|
2021-09-10 18:20:45 +01:00 |
|
extreme_muts.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
get_plotting_dfs.R
|
saving work for the day after massive repurpose
|
2021-09-15 19:48:56 +01:00 |
|
get_plotting_dfs_with_lig.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
ggcorr_all_PS_LIG.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
Header_TT.R
|
fixed pos_count cals in function by specifying dplyr and changed summarize to summarise
|
2021-09-15 15:46:42 +01:00 |
|
hist_af_or_base.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
hist_af_or_combined.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
legend_adjustment.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
lineage_basic_barplots_combined.R
|
added lineage_labels and mutation_info_labels to combinig_dfs_plotting
|
2021-09-09 16:10:11 +01:00 |
|
lineage_data.R
|
added foldx_scaled and deepddg_scaled values added to combine_df.py and also used that script to merge all the dfs so that merged_df2 and merged_df3 are infact what we need for downstream processing
|
2021-09-10 16:58:36 +01:00 |
|
lineage_dist_plots.R
|
added foldx_scaled and deepddg_scaled values added to combine_df.py and also used that script to merge all the dfs so that merged_df2 and merged_df3 are infact what we need for downstream processing
|
2021-09-10 16:58:36 +01:00 |
|
logo_data.R
|
added shorter scripts for each different processing for plots to make it wasire to read code
|
2021-09-10 18:20:45 +01:00 |
|
logo_plots.R
|
added logo_plots.R that now produces all logo plots while sourcing the get_plotting_df.R script
|
2021-06-24 17:34:53 +01:00 |
|
mcsm_mean_stability.R
|
sorted subcols_axis script to generate correct axis cols for both PS and lig plots
|
2020-08-26 16:39:10 +01:00 |
|
notes
|
updated notes with supp table colnames
|
2020-09-10 20:15:00 +01:00 |
|
opp_mcsm_muts.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
or_plots_combined.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
other_plots_combined.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
output_tables.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
ps_plots_combined.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
replaceBfactor_pdb.R
|
generated replaced Bfactor pdbs
|
2020-08-24 14:37:28 +01:00 |
|
resolving_ambiguous_muts.R
|
updated running_plotting_scripts.R
|
2021-09-07 11:16:41 +01:00 |
|
running_plot_scripts
|
lineage dist plots combined generated
|
2020-09-09 13:18:57 +01:00 |
|
running_plotting_scripts.txt
|
updated notes
|
2021-09-07 11:18:10 +01:00 |
|
subcols_axis.R
|
generated pncA plot for poster for ps_combined
|
2021-07-07 11:38:07 +01:00 |
