#!/bin/bash
# Create a drug directory structure for processing
#
#
# Structure:
#
# $DATA_DIR/$DRUG/input
#                 |- original
#                 |- processed
#                 |- structure
#                 
# $DATA_DIR/$DRUG/output
#                 |- plots
#                 |- structure

DATA_DIR=~/git/Data

if [[ $1 == '' ]]; then
    echo "usage: mk-drug-dirs.sh <drug name>";
    exit;
else
    DRUG=$1
    echo Creating structure for: $DRUG

    if [ -d $DATA_DIR ]
    then
        echo Doing creation in $DATA_DIR
        mkdir -p $DATA_DIR/$DRUG/input/original
        mkdir -p $DATA_DIR/$DRUG/input/processed
        mkdir -p $DATA_DIR/$DRUG/input/structure
        mkdir -p $DATA_DIR/$DRUG/output/plots
        mkdir -p $DATA_DIR/$DRUG/output/structure
        
    else
        echo "Error: $DATA_DIR does not exist. Did you check it out of git?"
        exit
    fi

fi