#========
# basic_barplots_PS.R: 
#========
Rscript basic_barplots_PS.R
# Calls 'plotting_data.R' --> calls 'dirs.R'
 'Plotting_data.R':
#drug = opt$drug
#gene = opt$gene

# hardcoding when not using cmd
drug = "streptomycin"
gene = "gid"

#TODO
making such that cmd line agrs are passed to basic_barplots_PS.R for gene, drug and maybe input file
and then these call functions

Delete: dirs.R
after grepping
barplots_subcolours_aa_combined.R:source("dirs.R")
basic_barplots_PS.R:source("dirs.R")
resolving_ambiguous_muts.R:source("dirs.R")

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