#!/usr/bin/env Rscript             
#########################################################
# TASK: importing dir str 
# create a function that takes 'drug' and 'gene' as args, 
# This script is sourced by plotting.R to import dir str
# for various plots, etc.
#########################################################
import_dirs <- function(drug, gene) {
  gene_match = paste0(gene,"_p.")
  cat(gene_match)
  
  #=============
  # directories and variables
  #=============
  datadir        <<- paste0("~/git/Data/")
  indir          <<- paste0(datadir, drug, "/input")
  outdir         <<- paste0("~/git/Data/", drug, "/output")
  plotdir        <<- paste0("~/git/Data/", drug, "/output/plots")
  
  dr_muts_col    <<- paste0('dr_mutations_', drug)
  other_muts_col <<- paste0('other_mutations_', drug)
  resistance_col <<- "drtype"
  
}

#==================
# mcsm ligand distance  cut off
#==================
mcsm_lig_cutoff <<- 10

#==================
# Angstroms symbol
#==================

angstroms_symbol <<- "\u212b"
#cat(paste0("There are ", nrow(my_df_u_lig), " sites lying within 10", angstroms_symbol, " of the ligand\n"))

#==================
# Delta symbol
#==================

delta_symbol <<- "\u0394"; delta_symbol

###########################
# variables for my cols
###########################

mcsm_red2 <<-  "#ae301e" # most negative
mcsm_red1 <<-  "#f8766d"

mcsm_mid <<- "white" # middle

mcsm_blue1 <<- "#00bfc4"
mcsm_blue2 <<- "#007d85" # most positive