#============= # merged_df2 #============= ---------------- # no. of samples ---------------- Var1 Freq 1 8 2 lineage1 144 3 lineage1;lineage2 3 4 lineage1;lineage4 4 5 lineage2 1886 6 lineage2;lineage4 19 7 lineage3 190 8 lineage3;lineage4 11 9 lineage4 2213 10 lineage4;lineage6 1 11 lineage4;lineage7 1 12 lineage4;lineageBOV 1 13 lineage5 31 14 lineage6 9 15 lineage7 3 16 lineageBOV 392 ---------------- # no. of nsSNPs ---------------- sel_lineages num_snps_u total_samples 1 lineage1 74 144 2 lineage2 277 1886 3 lineage3 104 190 4 lineage4 311 2213 5 lineage5 18 31 6 lineage6 8 9 7 lineage7 1 3 #============= # merged_df2_comp #============= ---------------- # no. of samples ---------------- Var1 Freq 1 3 2 lineage1 108 3 lineage1;lineage2 2 4 lineage1;lineage4 2 5 lineage2 1497 6 lineage2;lineage4 13 7 lineage3 154 8 lineage3;lineage4 3 9 lineage4 1846 10 lineage4;lineageBOV 1 11 lineage5 12 12 lineage6 2 13 lineageBOV 36 ---------------- # no. of nsSNPs ---------------- sel_lineages num_snps_u total_samples 1 lineage1 42 108 2 lineage2 141 1497 3 lineage3 75 154 4 lineage4 148 1846 5 lineage5 9 12 6 lineage6 2 2 7 lineage7 0 0