#source("~/git/LSHTM_analysis/config/gid.R")
#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")


LogoPlotSnps(plot_df = merged_df3
             , x_axis_colname = "position"
             , symbol_mut_colname = "mutant_type"
             , symbol_wt_colname = "wild_type"
             , omit_snp_count = c(0)# can be 1, 2, etc.
             , my_logo_col = "taylor"
             , x_lab = "Wild-type position"
             , y_lab = ""
             , x_ats = 13 # text size
             , x_tangle = 90 # text angle
             , y_ats = 20
             , y_tangle = 0
             , x_tts = 18 # title size
             , y_tts = 18
             , leg_pos = "top" # can be top, left, right and bottom or c(0.8, 0.9)
             , leg_dir = "horizontal" #can be vertical or horizontal
             , leg_ts = 14 # leg text size
             , leg_tts = 16 # leg title size
)