mCSM Analysis
=============

This contains scripts that does the following:
 1. mCSM analysis: using bash, python and R
 2. meta data analysis: using python and R
 
Requires an additional 'Data' directory. Batteries not included:-)

## Assumptions

 1. git repos are cloned to `~/git`
 2. Requires a data directory with an `input` and `output` subdirs. Can be specified on the CLI with `--datadir`, and optionally can be created with `mk_drug_dirs.sh <DRUG_NAME>`

## LSHTM\_analysis: 
 
subdirs within this repo

```
 meta\_data\_analysis/
 	*.R
 	*.py
	
 mcsm_analysis
#	<drug>/

 foldx_analysis
 
 plotting
 	*.R
 
```

More docs here as I write them.