#!/usr/bin/env python3
# -*- coding: utf-8 -*-
'''
Created on Tue Aug  6 12:56:03 2019

@author: tanu
'''
# FIXME: change filename  2(mcsm normalised data)
# to be consistent like (pnca_complex_mcsm_norm.csv) : changed manually, but ensure this is done in the mcsm pipeline
#=======================================================================
# Task: combine 2 dfs on comm_valson cols by detecting them
# includes sainity checks

#=======================================================================
#%% load packages
import sys, os
import pandas as pd
import numpy as np
import re
#from varname import nameof

#%% end of variable assignment for input and output files
#=======================================================================
#%% function/methd to combine dfs

def detect_common_cols (df1, df2):
    """
    Detect comm_valson cols
    
    @param df1: df
    @type df1: pandas df

    @param df2: df
    @type df2: pandas df
          
    @return: comm_valson cols
    @type: list
    """
    common_cols  = np.intersect1d(df1.columns, df2.columns).tolist()
    print('Length of comm_cols:', len(common_cols)
          , '\nmerging column/s:', common_cols
          , '\ntype:', type(common_cols)
          , '\ndtypes in merging columns:\n', df1[common_cols].dtypes)
    
    return common_cols
    

def combine_dfs_with_checks(df1, df2, my_join = 'outer'):
    """
    Combine 2 dfs by finding merging columns automatically

    @param df1: data frame
    @type df1: pandas df

    @param df2: data frame
    @type df2: pandas df
    
    @my_join: join type for merging
    @type my_join: string
        
    @return:  combined_df
    @type: pandas df
    """
        
    print('Finding comm_cols and merging cols:'
          ,'\n=========================================================')

    common_cols  = np.intersect1d(df1.columns, df2.columns).tolist()
    print('Length of comm_cols:', len(common_cols)
          , '\nmerging column/s:', common_cols
          , '\ntype:', type(common_cols))
    
    #print('\ndtypes in merging columns:\n', df1[common_cols].dtypes)
    
    print('selecting consistent dtypes for merging (object i.e string)')
    #merging_cols = df1[comm_valson_cols].select_dtypes(include = [object]).columns.tolist()
    #merging_cols = df1[comm_valson_cols].select_dtypes(include = ['int64']).columns.tolist()
    merging_cols = common_cols.copy()

    nmerging_cols = len(merging_cols)
    print(' length of merging cols:', nmerging_cols
      , '\nmerging cols:', merging_cols, 'type:', type(merging_cols)
      , '\n=========================================================')
    
    #========================
    # merge 1 (combined_df)
    # concatenating 2dfs:
    # df1, df2
    #========================
    # checking cross-over of mutations in the two dfs to merge
    ndiff_1 = df1[merging_cols].squeeze().isin(df2[merging_cols].squeeze()).sum()
    ndiff1 =  df1.shape[0] - ndiff_1
    print('There are', ndiff1, 'unmatched mutations in left df')
   
    #missing_mutinfo = df1[~left_df['mutationinformation'].isin(df2['mutationinformation'])]
    #missing_mutinfo.to_csv('infoless_muts.csv')

    ndiff_2 = df2[merging_cols].squeeze().isin(df1[merging_cols].squeeze()).sum()
    ndiff2 = df2.shape[0] - ndiff_2
    print('There are', ndiff2, 'unmatched mutations in right_df')

    #comm_vals = np.intersect1d(df1[merging_cols], df2[merging_cols])
    #comm_vals_count = len(comm_vals)
    #print('length of comm_valson values:', comm_vals_count , '\ntype:', type(comm_vals_count))

    #========================
    # merging dfs & sanity checks
    #========================
    fail = False 
    print('combing with:', my_join)
    comb_df = pd.merge(df1, df2, on = merging_cols, how = my_join)
        
    expected_cols = df1.shape[1] + df2.shape[1] - nmerging_cols
    
    
    if my_join == 'right':
        df2_nd = df2.drop_duplicates(merging_cols, keep = 'first')
        expected_rows = df2_nd.shape[0]
        
    if my_join == 'left':
        expected_rows = df1.shape[0]
    
    
    #if my_join == 'inner':
    #    expected_rows = comm_vals_count
        
    #if my_join == 'outer':
    #    df1_nd = df1.drop_duplicates(merging_cols, keep = 'first')
    #    df2_nd = df2.drop_duplicates(merging_cols, keep = 'first')
    #    expected_rows = df1_nd.shape[0] + df2_nd.shape[0] - comm_vals_count
    
        
    if my_join == ('inner' or 'outer') and len(merging_cols) > 1:
        #comm_vals = np.intersect1d(df1['mutationinformation'], df2['mutationinformation'])
        print('length of merging_cols > 1, therefore omitting row checks')
        combined_df = comb_df.copy()
        expected_rows = len(combined_df)    
        
    else:
        comm_vals = np.intersect1d(df1[merging_cols], df2[merging_cols])
        print('length of merging_cols == 1, calculating expected rows in merged_df')
        combined_df = comb_df.drop_duplicates(subset = merging_cols, keep ='first')
        if my_join == 'inner':
            expected_rows = len(comm_vals)
        if my_join == 'outer':
            df1_nd = df1.drop_duplicates(merging_cols, keep = 'first')
            df2_nd = df2.drop_duplicates(merging_cols, keep = 'first')
            expected_rows = df1_nd.shape[0] + df2_nd.shape[0] - len(comm_vals)  
     
    if len(combined_df) == expected_rows and len(combined_df.columns) == expected_cols:
        print('PASS: successfully combined dfs with:', my_join, 'join')
    else:
        print('FAIL: combined_df\'s expected rows and cols not matched')
        fail = True 
    print('\nExpected no. of rows:', expected_rows
          , '\nGot:', len(combined_df)
          , '\nExpected no. of cols:', expected_cols
          , '\nGot:', len(combined_df.columns))
    if fail:
        sys.exit()
    
    #if clean:
    #foo = combined_df2.filter(regex = r'.*_x|_y', axis = 1)
    #print(foo.columns)
    #print('Detected duplicate cols with suffix: _x _y'
    #      , '\Dropping duplicate cols and cleaning')
    
    # drop position col containing suffix '_y' and then rename col without suffix
    combined_df_clean = combined_df.drop(combined_df.filter(regex = r'.*_y').columns, axis = 1)
    combined_df_clean.rename(columns=lambda x: re.sub('_x$','', x), inplace = True)
    
    return combined_df_clean

#%% end of function
#=======================================================================