#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Wed Aug 19 14:33:51 2020

@author: tanu
"""
#%% load packages
import os
homedir = os.path.expanduser('~')
os.chdir (homedir + '/git/LSHTM_analysis/dynamut')
from get_results_dynamut import *
########################################################################
# variables
my_host = 'http://biosig.unimelb.edu.au'
# Needed if things try to block the 'requests' user agent
#headers = {"User-Agent":"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/83.0.4103.97 Safari/537.36"}

# TODO: add cmd line args
#gene = ''
#drug = ''
datadir = homedir + '/git/Data/'
indir = datadir + drug + '/input/'
outdir = datadir + drug + '/output/'
outdir_dynamut_temp = outdir + 'dynamut_results/dynamut_temp/'
#==============================================================================
# batch 7 (previously 1b file): RETRIEVED 17 Aug 16:40
my_url_file = outdir_dynamut_temp + 'dynamut_result_url_gid_b7.txt'
my_suffix = 'gid_b7'
#==============================================================================

#==========================
# CALL: get_results() 
# Data: gid+streptomycin
#==========================
# output file saves in dynamut_results/ (created if it doesn't exist) inside outdir
print('Fetching results from url file :', my_url_file, '\nsuffix:', my_suffix)

get_results(url_file  = my_url_file
            , host_url = my_host
            , output_dir = outdir
            , outfile_suffix = my_suffix)
           
########################################################################