BENS940104 Genetic code matrix (Benner et al., 1994) DOSZ010103 An amino acid similarity matrix based on the THREADER force field (Dosztanyi-Torda, 2001) GIAG010101 Residue substitutions matrix from thermo/mesophilic to psychrophilic enzymes (Gianese et al., 2001) MIYT790101 Amino acid pair distance (Miyata et al., 1979) OVEJ920102 Environment-specific amino acid substitution matrix for alpha residues (Overington et al., 1992) RISJ880101 Scoring matrix (Risler et al., 1988)