tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

gidb_dev #1

Closed
tanu wants to merge 386 commits from gidb_dev into master
pull from: gidb_dev
merge into: tanu:master
Conversation 3 Commits 386 Files changed 175 +3
1 changed files with 3 additions and 0 deletions
Download patch file Download diff file Expand all files Collapse all files
Showing only changes of commit fc47c58f91 - Show all commits

3
scripts/plotting/corr_plots.R
View file

@ -80,6 +80,8 @@ rm( merged_df2, merged_df2_comp, merged_df2_lig, merged_df2_comp_lig, my_df_u, m
#=========================== #===========================
# Data for Correlation plots:PS # Data for Correlation plots:PS
#=========================== #===========================
table(df_ps$duet_outcome)
# adding log cols # adding log cols
df_ps$log10_or_mychisq = log10(df_ps$or_mychisq) df_ps$log10_or_mychisq = log10(df_ps$or_mychisq)
df_ps$neglog_pval_fisher = -log10(df_ps$pval_fisher) df_ps$neglog_pval_fisher = -log10(df_ps$pval_fisher)
@ -172,6 +174,7 @@ dev.off()
#=========================== #===========================
# Data for Correlation plots: LIG # Data for Correlation plots: LIG
#=========================== #===========================
table(df_lig$ligand_outcome)
df_lig$log10_or_mychisq = log10(df_lig$or_mychisq) df_lig$log10_or_mychisq = log10(df_lig$or_mychisq)
df_lig$neglog_pval_fisher = -log10(df_lig$pval_fisher) df_lig$neglog_pval_fisher = -log10(df_lig$pval_fisher)