tanu/LSHTM_analysis
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gidb_dev #1

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tanu wants to merge 386 commits from gidb_dev into master
pull from: gidb_dev
merge into: tanu:master
Conversation 3 Commits 386 Files changed 175 +2 -1
2 changed files with 2 additions and 1 deletions
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mcsm_analysis/pyrazinamide/scripts/plotting/logolas_logoplot.R
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@ -164,7 +164,7 @@ chemistry = data.frame(
# uncomment as necessary # uncomment as necessary
my_type = "EDLogo" my_type = "EDLogo"
my_type = "Logo" #my_type = "Logo"
logomaker(tab_mt logomaker(tab_mt
, type = my_type , type = my_type

1
mcsm_analysis/pyrazinamide/scripts/plotting/snp_logo_plot.R
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@ -53,6 +53,7 @@ source("../combining_two_df.R")
#%%%%%%%%%%%%%%%%%%%%%%%% #%%%%%%%%%%%%%%%%%%%%%%%%
# REASSIGNMENT # REASSIGNMENT
my_df = merged_df3 # to show multiple mutations per site my_df = merged_df3 # to show multiple mutations per site
my_df = read.csv(file.choose())
#%%%%%%%%%%%%%%%%%%%%%%%% #%%%%%%%%%%%%%%%%%%%%%%%%
rm(merged_df2, merged_df2_comp, merged_df3, merged_df3_comp) rm(merged_df2, merged_df2_comp, merged_df3, merged_df3_comp)