scripts/af_or_calcs_scratch.R

@@ -554,5 +554,12 @@ for (i in snps){
   
   
  # https://stats.stackexchange.com/questions/259635/what-is-the-difference-using-a-fishers-exact-test-vs-a-logistic-regression-for
-  exact2x2(table(dst, mut),tsmethod="central")
+  #mymethod = "minlike" # default
+  mymethod = "central"
+  #mymethod = "blaker"
+  
+  exact2x2(table(dst, mut),tsmethod=mymethod)
+  
+  mcnemar.exact(x,y=NULL, conf.level=.95)
+  
 #=====================================================================