tanu/LSHTM_analysis
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gidb_dev #1

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tanu wants to merge 386 commits from gidb_dev into master
pull from: gidb_dev
merge into: tanu:master
Conversation 3 Commits 386 Files changed 175 +2 -1
1 changed files with 2 additions and 1 deletions
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Showing only changes of commit 9c221e6786 - Show all commits

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dynamut/get_results.py
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@ -82,6 +82,7 @@ def get_results(url_file, host_url, output_dir, outfile_suffix):
out_filename = dynamut_results_dir + '/dynamut_output_' + outfile_suffix + '.csv'
dynamut_results_out_df.to_csv(out_filename, index = False)
# TODO: add as a cmd option
# Download .tar.gz file
prediction_number = re.search(r'([0-9]+$)', line).group(0)
tgz_url = f"{host_url}/dynamut/results_file/results_" + prediction_number + '.tar.gz'
@ -89,7 +90,7 @@ def get_results(url_file, host_url, output_dir, outfile_suffix):
response_tgz = requests.get(tgz_url, stream = True)
if response_tgz.status_code == 200:
print('\nDownloading tar.gz file:', tgz_url
, '\nSaving file as:', tgz_filename)
, '\n\nSaving file as:', tgz_filename)
with open(tgz_filename, 'wb') as f:
f.write(response_tgz.raw.read())