tanu/LSHTM_analysis
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gidb_dev #1

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tanu wants to merge 386 commits from gidb_dev into master
pull from: gidb_dev
merge into: tanu:master
Conversation 3 Commits 386 Files changed 175 +6 -1
1 changed files with 6 additions and 1 deletions
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Showing only changes of commit 7f5ca7f5a4 - Show all commits

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scripts/data_selective_pressure.R
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@ -28,7 +28,10 @@ cols_to_select = c("id", "sample"
, "mutationinformation"
, "wild_type"
, "position"
, "mutant_type")
, "mutant_type"
, "af"
, "or_mychisq"
, "or_kin")
dnds_df_all = merged_df2[, cols_to_select]
@ -69,3 +72,5 @@ write.csv(dnds_df_all, select_pressure_muts_all, row.names = FALSE)
#----------
cat("Filename:", select_pressure_muts_aa_site)
write.csv(dnds_df_aa_site, select_pressure_muts_aa_site, row.names = FALSE)
colnames(dnds_df_all)