tanu/LSHTM_analysis
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gidb_dev #1

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tanu wants to merge 386 commits from gidb_dev into master
pull from: gidb_dev
merge into: tanu:master
Conversation 3 Commits 386 Files changed 175 +12 -5
2 changed files with 12 additions and 5 deletions
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Showing only changes of commit 2995299179 - Show all commits

9
dynamut/run_get_results_dynamut.py
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@ -24,10 +24,13 @@ indir = datadir + '/' + drug + '/input'
outdir = datadir + '/' + drug + '/output'
#==============================================================================
# batch 3: 02.txt, # RETRIEVED 18 Feb
my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b3.txt'
my_suffix = 'gid_b3'
# batch 4: 03.txt, # RETRIEVED
my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b4.txt'
my_suffix = 'gid_b4'
# batch 5: 04.txt, # RETRIEVED
#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b5.txt'
#my_suffix = 'gid_b5'
#==============================================================================
#==========================

8
dynamut/run_submit_dynamut.py
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@ -29,9 +29,13 @@ my_email = 'tanushree.tunstall@lshtm.ac.uk'
my_pdb_file = indir + '/gid_complex.pdb'
#==============================================================================
# batch 4: 03.txt, # RAN: 18 Feb, ~11:19
#my_mutation_list = outdir + '/snp_batches/50/snp_batch_03.txt'
#my_suffix = 'gid_b4'
# batch 5: 04.txt, # RAN: 18 Feb, ~11:21
my_mutation_list = outdir + '/snp_batches/50/snp_batch_04.txt'
my_suffix = 'gid_b5'
#my_mutation_list = outdir + '/snp_batches/50/snp_batch_04.txt'
#my_suffix = 'gid_b5'
#==============================================================================
#==========================