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gidb_dev #1

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tanu wants to merge 386 commits from gidb_dev into master
pull from: gidb_dev
merge into: tanu:master
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scripts/plotting/notes
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@ -72,5 +72,17 @@ table(snpsBYpos_df$snpsBYpos)
#======================
dr_mutations_pyrazinamide : 227
other_mutations_pyrazinamide : 197
#======================
# suppl tables
#======================
# sorted by position
cols_to_output = c("mutationinformation", "mutation_info", "af", "or_mychisq", "neglogpval_fisher", "or_kin", "neglog_pwald_kin"
, "duet_stability_change", "duet_outcome", "ligand_distance", "ligand_affinity_change", "ligand_outcome")
# remove the ligand distance plot from "other plots"