tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

gidb_dev #1

Closed
tanu wants to merge 386 commits from gidb_dev into master
pull from: gidb_dev
merge into: tanu:master
Conversation 3 Commits 386 Files changed 175 -1
1 changed files with 0 additions and 1 deletions
Download patch file Download diff file Expand all files Collapse all files
Showing only changes of commit 18af246c24 - Show all commits

1
scripts/count.py
View file

@ -311,7 +311,6 @@ n_stop*100 #0.11
all_tot = n_del*100 + n_ins*100 + n_stop*100 #1.2
#%% count pncA WT
wt_gene = meta_data.loc[meta_data[dr_muts_col].str.contains('WT', na = False, regex = True, case = False) | meta_data[other_muts_col].str.contains('WT', na = False, regex = True, case = False) ]
meta_data['muts_and_lineage'] = meta_data[dr_muts_col] + meta_data[other_muts_col] + meta_data['lineage']