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gidb_dev

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• 7c0824d0f2 added script for formatting mcsm_na results Tanushree Tunstall 2021-08-06 19:12:57 +01:00
• 93482df47a added script for formatting mcsm_na results Tanushree Tunstall 2021-08-06 19:12:57 +01:00
• 656639e871 ran submit and get_results for one last batch for mcsm_na and did some bash formatting to get proper filenames, etc. Tanushree Tunstall 2021-08-06 19:09:29 +01:00
• 50cf6ca3ac ran submit and get_results for one last batch for mcsm_na and did some bash formatting to get proper filenames, etc. Tanushree Tunstall 2021-08-06 19:09:29 +01:00
• 718f92d7ff resuming work after conference Tanushree Tunstall 2021-08-05 16:54:34 +01:00
• 4733ec9db0 resuming work after conference Tanushree Tunstall 2021-08-05 16:54:34 +01:00
• 6759649c61 indicated which cols are not available for pnca as I ran these scripts for generating plots for the poster Tanushree Tunstall 2021-07-07 13:12:29 +01:00
• a9119d7f03 indicated which cols are not available for pnca as I ran these scripts for generating plots for the poster Tanushree Tunstall 2021-07-07 13:12:29 +01:00
• 5eb07cdf86 added leg_title size for bp function Tanushree Tunstall 2021-07-07 13:11:13 +01:00
• 55adc3fa60 added leg_title size for bp function Tanushree Tunstall 2021-07-07 13:11:13 +01:00
• 4bf4650c88 generated pncA plot for poster for ps_combined Tanushree Tunstall 2021-07-07 11:38:07 +01:00
• 59a1213f65 generated pncA plot for poster for ps_combined Tanushree Tunstall 2021-07-07 11:38:07 +01:00
• a6f0832a42 reran plots with current lig dist Tanushree Tunstall 2021-06-30 17:35:57 +01:00
• cb3a0f71da reran plots with current lig dist Tanushree Tunstall 2021-06-30 17:35:57 +01:00
• b679068a5e added the almost done shiny for barplots subcolours Tanushree Tunstall 2021-06-30 17:20:04 +01:00
• ed2fc016ca added the almost done shiny for barplots subcolours Tanushree Tunstall 2021-06-30 17:20:04 +01:00
• c599d28377 renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it. Tanushree Tunstall 2021-06-29 14:05:48 +01:00
• 374764b136 renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it. Tanushree Tunstall 2021-06-29 14:05:48 +01:00
• 9f5b983bc0 added barplots_subcolours.R that generates heatmap style barplots Tanushree Tunstall 2021-06-29 14:00:10 +01:00
• db66fdb844 added barplots_subcolours.R that generates heatmap style barplots Tanushree Tunstall 2021-06-29 14:00:10 +01:00
• 89e6b03673 moved subcols script to redundant Tanushree Tunstall 2021-06-29 13:59:38 +01:00
• c9a5e7de6b moved subcols script to redundant Tanushree Tunstall 2021-06-29 13:59:38 +01:00
• a9f9cec494 moved barplot_colour_function.R to functions Tanushree Tunstall 2021-06-29 13:58:22 +01:00
• ac09cfc4e0 moved barplot_colour_function.R to functions Tanushree Tunstall 2021-06-29 13:58:22 +01:00
• 29d9717abe updated running_plotting_scripts.txt with corr_plots.R Tanushree Tunstall 2021-06-28 17:30:25 +01:00
• 3d4ccc51d7 updated running_plotting_scripts.txt with corr_plots.R Tanushree Tunstall 2021-06-28 17:30:25 +01:00
• 20976c31bb moved corr_data and corr_PS_LIG.R to redundant Tanushree Tunstall 2021-06-28 17:29:31 +01:00
• 237e293ca3 moved corr_data and corr_PS_LIG.R to redundant Tanushree Tunstall 2021-06-28 17:29:31 +01:00
• 0f983d2889 added corr_plots.R to generate corr plots by adding source data in get_plotting_dfs.R and tested with cmd Tanushree Tunstall 2021-06-28 17:27:50 +01:00
• 55b5d31c07 added corr_plots.R to generate corr plots by adding source data in get_plotting_dfs.R and tested with cmd Tanushree Tunstall 2021-06-28 17:27:50 +01:00
• b614962e45 added corr data to get_plotting_dfs.R and generate corr plots Tanushree Tunstall 2021-06-28 17:25:45 +01:00
• a7d26412e5 added corr data to get_plotting_dfs.R and generate corr plots Tanushree Tunstall 2021-06-28 17:25:45 +01:00
• 639ccf1cd7 moved old logo plots scripts to redundant and updated running_plotting_scripts.txt to reflect these and how to run the single logo_plots.R to generate logo plots Tanushree Tunstall 2021-06-24 17:45:40 +01:00
• 2993ab722a moved old logo plots scripts to redundant and updated running_plotting_scripts.txt to reflect these and how to run the single logo_plots.R to generate logo plots Tanushree Tunstall 2021-06-24 17:45:40 +01:00
• f1a8fb583a added logo_plots.R that now produces all logo plots while sourcing the get_plotting_df.R script Tanushree Tunstall 2021-06-24 17:34:53 +01:00
• 8de2686401 added logo_plots.R that now produces all logo plots while sourcing the get_plotting_df.R script Tanushree Tunstall 2021-06-24 17:34:53 +01:00
• e75cfd2665 checked logo_multiple_muts.R with the new sourcing script for data Tanushree Tunstall 2021-06-24 16:43:23 +01:00
• 0e15c05d8b checked logo_multiple_muts.R with the new sourcing script for data Tanushree Tunstall 2021-06-24 16:43:23 +01:00
• 71d874e350 added get_plotting_dfs.R as a mother script to be sourced by all plotting scripts Tanushree Tunstall 2021-06-24 14:21:34 +01:00
• 6bbc3328b9 added get_plotting_dfs.R as a mother script to be sourced by all plotting scripts Tanushree Tunstall 2021-06-24 14:21:34 +01:00
• 5eba273a55 made logo_plot.R source script that pull in all the data Tanushree Tunstall 2021-06-24 14:19:46 +01:00
• 9668452e98 made logo_plot.R source script that pull in all the data Tanushree Tunstall 2021-06-24 14:19:46 +01:00
• 506e639a7b moved my_pairs_panel.R to functions/ Tanushree Tunstall 2021-06-24 12:13:15 +01:00
• c8be8407e8 moved my_pairs_panel.R to functions/ Tanushree Tunstall 2021-06-24 12:13:15 +01:00
• 762b1a3931 fixed cmd running script problem for logo plots Tanushree Tunstall 2021-06-24 12:12:36 +01:00
• ca2315523d fixed cmd running script problem for logo plots Tanushree Tunstall 2021-06-24 12:12:36 +01:00
• e822f9f690 added first line to all func to run from Tanushree Tunstall 2021-06-24 10:02:14 +01:00
• 552c5e77aa added first line to all func to run from Tanushree Tunstall 2021-06-24 10:02:14 +01:00
• 1c27bbff11 saving work on logo plots before finishing Tanushree Tunstall 2021-06-23 16:49:18 +01:00
• 48a85ede0c saving work on logo plots before finishing Tanushree Tunstall 2021-06-23 16:49:18 +01:00
• 8f4daba98d generated logo_plot.R from cmd, checked Tanushree Tunstall 2021-06-23 16:35:44 +01:00
• 9d964e84b6 generated logo_plot.R from cmd, checked Tanushree Tunstall 2021-06-23 16:35:44 +01:00
• 7e6affea84 added test_plotting_data.R, and replaced input param of csv into df Tanushree Tunstall 2021-06-23 16:16:23 +01:00
• 015e34894f added test_plotting_data.R, and replaced input param of csv into df Tanushree Tunstall 2021-06-23 16:16:23 +01:00
• 2aec79af31 changes made to combining_dfs_plotting.R Tanushree Tunstall 2021-06-23 16:15:15 +01:00
• 8277b489d6 changes made to combining_dfs_plotting.R Tanushree Tunstall 2021-06-23 16:15:15 +01:00
• c6d1260f74 updated logo_plot.R with functions Tanushree Tunstall 2021-06-23 12:06:41 +01:00
• 4f4734f565 updated logo_plot.R with functions Tanushree Tunstall 2021-06-23 12:06:41 +01:00
• 13c61e7813 moved combining_dfs_plotting.R to function and added test script for this as well Tanushree Tunstall 2021-06-22 18:15:15 +01:00
• 5dec604742 moved combining_dfs_plotting.R to function and added test script for this as well Tanushree Tunstall 2021-06-22 18:15:15 +01:00
• ac383165ec added files that were moved to redundant Tanushree Tunstall 2021-06-22 18:06:08 +01:00
• 754cd70a6f added files that were moved to redundant Tanushree Tunstall 2021-06-22 18:06:08 +01:00
• 04a7cf15dc turned combining_dfs_plotting.R to a function and moved old script to redundant Tanushree Tunstall 2021-06-22 18:04:10 +01:00
• ea79f3b3c7 turned combining_dfs_plotting.R to a function and moved old script to redundant Tanushree Tunstall 2021-06-22 18:04:10 +01:00
• e10ab6a7c6 updating script to sort out proper merging for plotting Tanushree Tunstall 2021-06-22 14:46:03 +01:00
• cd5cbce3a0 updating script to sort out proper merging for plotting Tanushree Tunstall 2021-06-22 14:46:03 +01:00
• 064182d784 took extra lines from data extraction Tanushree Tunstall 2021-06-21 16:15:44 +01:00
• 7f2c1d7ed8 took extra lines from data extraction Tanushree Tunstall 2021-06-21 16:15:44 +01:00
• 920007cc83 added af_or to add to combining_dfs.py Tanushree Tunstall 2021-06-21 14:53:04 +01:00
• a3c10eb842 added af_or to add to combining_dfs.py Tanushree Tunstall 2021-06-21 14:53:04 +01:00
• 8a301e8bb1 added deep ddg formatted data to combinig_dfs.py Tanushree Tunstall 2021-06-21 12:56:06 +01:00
• 1155959e67 added deep ddg formatted data to combinig_dfs.py Tanushree Tunstall 2021-06-21 12:56:06 +01:00
• 9534fc57d4 added deepddg data to combining_df.py Tanushree Tunstall 2021-06-21 11:53:56 +01:00
• 3ff9604002 added deepddg data to combining_df.py Tanushree Tunstall 2021-06-21 11:53:56 +01:00
• f79aea254e added function to add aa code for mcsm and gwas style mutations to a given files Tanushree Tunstall 2021-06-18 17:48:26 +01:00
• 25fcebe448 added function to add aa code for mcsm and gwas style mutations to a given files Tanushree Tunstall 2021-06-18 17:48:26 +01:00
• f6a2e029cb saving work before adding files Tanushree Tunstall 2021-06-18 17:47:09 +01:00
• 926d181120 saving work before adding files Tanushree Tunstall 2021-06-18 17:47:09 +01:00
• 86ed1805fc Merge branch 'gidb_dev' Tanushree Tunstall 2021-06-14 13:27:00 +01:00
• 0e0f7c89df Merge branch 'gidb_dev' Tanushree Tunstall 2021-06-14 13:27:00 +01:00
• ddb1a7a7aa added aa_prop.py and add_aa_prop.py to add aa properties for wt and mutant in a given file containing one letter code wt and mut cols as csv Tanushree Tunstall 2021-06-14 13:24:00 +01:00
• 0881181f4b added aa_prop.py and add_aa_prop.py to add aa properties for wt and mutant in a given file containing one letter code wt and mut cols as csv Tanushree Tunstall 2021-06-14 13:24:00 +01:00
• 57e4d8cd1e changed aa_prop_water to 3 categ according to KD, updated ref dict Tanushree Tunstall 2021-06-14 13:22:56 +01:00
• 58b5b63595 changed aa_prop_water to 3 categ according to KD, updated ref dict Tanushree Tunstall 2021-06-14 13:22:56 +01:00
• 81ab3fe5ba added function and test for aa_prop_bp.R Tanushree Tunstall 2021-06-14 09:22:05 +01:00
• 2a8133898f added function and test for aa_prop_bp.R Tanushree Tunstall 2021-06-14 09:22:05 +01:00
• ca1a0e10ca added example for layout Tanushree Tunstall 2021-06-14 09:06:30 +01:00
• 140bdc6d96 added example for layout Tanushree Tunstall 2021-06-14 09:06:30 +01:00
• 687adf0ec7 weird pdbtools commit Tanushree Tunstall 2021-06-11 21:45:18 +01:00
• 851683811e weird pdbtools commit Tanushree Tunstall 2021-06-11 21:45:18 +01:00
• 8fa9faa17d added another aa dict type to reference_dict.py and calculated electrostatisc changes for muts based on adding these properties to mcsm mut stule snps. This will allow the calculation on a given file type since the ref dict can now easily be adapted. Tanushree Tunstall 2021-06-11 17:12:21 +01:00
• 6dd8cc6f44 added another aa dict type to reference_dict.py and calculated electrostatisc changes for muts based on adding these properties to mcsm mut stule snps. This will allow the calculation on a given file type since the ref dict can now easily be adapted. Tanushree Tunstall 2021-06-11 17:12:21 +01:00
• f88e2665e9 calculating af_or using function and cmd options now Tanushree Tunstall 2021-06-11 15:12:08 +01:00
• 6e8116bc16 calculating af_or using function and cmd options now Tanushree Tunstall 2021-06-11 15:12:08 +01:00
• 7686aa39b4 added script to test af_or_calcs Tanushree Tunstall 2021-06-11 13:33:25 +01:00
• 5f82c8b393 added script to test af_or_calcs Tanushree Tunstall 2021-06-11 13:33:25 +01:00
• 931f8ec2f9 added mychisq_or.R and af_or_calcs.R Tanushree Tunstall 2021-06-11 13:28:07 +01:00
• 96af746726 added mychisq_or.R and af_or_calcs.R Tanushree Tunstall 2021-06-11 13:28:07 +01:00
• b6df47a0cd moved old af_or_calcs.R to redundant Tanushree Tunstall 2021-06-11 13:27:40 +01:00
• ad0b814f9c moved old af_or_calcs.R to redundant Tanushree Tunstall 2021-06-11 13:27:40 +01:00