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e36e7736db
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playing with dm_om (other)plots data and graph on gid branch
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2021-08-26 16:35:46 +01:00 |
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1e3670f935
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added log10 OR and P values to myaf_or_calcs.R
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2021-08-23 20:01:01 +01:00 |
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0c16937b68
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added corr plots as function for interactive graphs on shiny
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2021-08-20 18:52:47 +01:00 |
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c0c30fd527
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adde format_results_dynamut2.py and ran shiny scripts for barplots
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2021-08-19 16:25:38 +01:00 |
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718f92d7ff
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resuming work after conference
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2021-08-05 16:54:34 +01:00 |
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6759649c61
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indicated which cols are not available for pnca as I ran these scripts for generating plots for the poster
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2021-07-07 13:12:29 +01:00 |
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4bf4650c88
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generated pncA plot for poster for ps_combined
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2021-07-07 11:38:07 +01:00 |
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a6f0832a42
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reran plots with current lig dist
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2021-06-30 17:35:57 +01:00 |
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b679068a5e
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added the almost done shiny for barplots subcolours
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2021-06-30 17:20:04 +01:00 |
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c599d28377
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renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it.
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2021-06-29 14:05:48 +01:00 |
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9f5b983bc0
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added barplots_subcolours.R that generates heatmap style barplots
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2021-06-29 14:00:10 +01:00 |
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89e6b03673
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moved subcols script to redundant
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2021-06-29 13:59:38 +01:00 |
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a9f9cec494
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moved barplot_colour_function.R to functions
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2021-06-29 13:58:22 +01:00 |
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29d9717abe
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updated running_plotting_scripts.txt with corr_plots.R
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2021-06-28 17:30:25 +01:00 |
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20976c31bb
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moved corr_data and corr_PS_LIG.R to redundant
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2021-06-28 17:29:31 +01:00 |
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0f983d2889
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added corr_plots.R to generate corr plots by adding source data in get_plotting_dfs.R and tested with cmd
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2021-06-28 17:27:50 +01:00 |
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b614962e45
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added corr data to get_plotting_dfs.R and generate corr plots
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2021-06-28 17:25:45 +01:00 |
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639ccf1cd7
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moved old logo plots scripts to redundant and updated running_plotting_scripts.txt to reflect these and how to run the single logo_plots.R to generate logo plots
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2021-06-24 17:45:40 +01:00 |
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f1a8fb583a
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added logo_plots.R that now produces all logo plots while sourcing the get_plotting_df.R script
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2021-06-24 17:34:53 +01:00 |
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e75cfd2665
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checked logo_multiple_muts.R with the new sourcing script for data
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2021-06-24 16:43:23 +01:00 |
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71d874e350
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added get_plotting_dfs.R as a mother script to be sourced by all plotting scripts
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2021-06-24 14:21:34 +01:00 |
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5eba273a55
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made logo_plot.R source script that pull in all the data
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2021-06-24 14:19:46 +01:00 |
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762b1a3931
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fixed cmd running script problem for logo plots
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2021-06-24 12:12:36 +01:00 |
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e822f9f690
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added first line to all func to run from
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2021-06-24 10:02:14 +01:00 |
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1c27bbff11
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saving work on logo plots before finishing
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2021-06-23 16:49:18 +01:00 |
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8f4daba98d
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generated logo_plot.R from cmd, checked
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2021-06-23 16:35:44 +01:00 |
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2aec79af31
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changes made to combining_dfs_plotting.R
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2021-06-23 16:15:15 +01:00 |
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c6d1260f74
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updated logo_plot.R with functions
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2021-06-23 12:06:41 +01:00 |
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13c61e7813
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moved combining_dfs_plotting.R to function and added test script for this as well
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2021-06-22 18:15:15 +01:00 |
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ac383165ec
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added files that were moved to redundant
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2021-06-22 18:06:08 +01:00 |
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04a7cf15dc
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turned combining_dfs_plotting.R to a function and moved old script to redundant
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2021-06-22 18:04:10 +01:00 |
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e10ab6a7c6
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updating script to sort out proper merging for plotting
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2021-06-22 14:46:03 +01:00 |
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ca1a0e10ca
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added example for layout
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2021-06-14 09:06:30 +01:00 |
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f88e2665e9
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calculating af_or using function and cmd options now
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2021-06-11 15:12:08 +01:00 |
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a2431b59e5
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minor tweak to plotting_globals.R to make gene_match a global var
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2021-06-11 11:21:20 +01:00 |
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f6259aa517
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moved functions/ in the scripts dir
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2021-06-11 11:11:39 +01:00 |
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0c3645705d
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moved old bp scripts to redundant
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2021-06-10 16:18:08 +01:00 |
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dccdfe9742
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moved plotting_func to functions and replaced 3 basic_barplots scripts with 1
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2021-06-10 16:09:58 +01:00 |
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5c018e23be
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added function for position_count_bp.R
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2021-06-10 14:46:11 +01:00 |
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4bee48f545
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added functions dir for further tidying and tested this with ind scripts for stability
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2021-06-09 18:13:18 +01:00 |
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786eaabe1a
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moved bp function script to function/
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2021-06-09 17:08:56 +01:00 |
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225360fb93
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added shiny app and turned stability bp to function
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2021-06-09 17:05:02 +01:00 |
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3f58a5c64c
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saving work
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2021-06-09 16:27:05 +01:00 |
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776c4e0279
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repuposed and ran basic_barplots for lig and foldx including filenames
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2021-06-09 11:33:08 +01:00 |
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d45a9499a2
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repurposed basic_barplots_foldx.R
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2021-06-09 11:24:50 +01:00 |
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6f24fc1fac
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uddated how to run plotting scripts. This is a cleaner version to keep up-to-date
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2021-06-08 16:53:07 +01:00 |
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ce8abafdfe
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wrapper script basic_barplots_PS.R now takes cmd and calls functions to generate plots.Tested and verfiied.
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2021-06-08 16:48:19 +01:00 |
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b25511a239
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tidied plotting_data.R as a function returning a lits of dfs
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2021-06-08 16:00:28 +01:00 |
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b8d0bc416a
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added plotting_globals and text file with info on how to run plotting scripst
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2021-06-04 17:26:01 +01:00 |
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d21605b31f
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tweaking baic bp to make generic
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2021-06-04 17:23:41 +01:00 |
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