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96129ddc34
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tidied script plotting_data.R by removing superceded code
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2021-09-10 18:19:56 +01:00 |
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c38462cf41
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finally moved foldx_outcome and deepddg_outcome calcs to combine_dfs.py in python script i.e cleaned source data
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2021-09-10 18:19:01 +01:00 |
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e28be8bf0d
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sorted combining_dfs.py with all other data files and tidied up get_plotting_dfs.R
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2021-09-10 18:16:41 +01:00 |
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66d45a8b73
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added lineage_dist.R nad renamed lineage_bp_data file to lineage_data
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2021-09-09 16:14:14 +01:00 |
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cdab8f0414
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added lineage_labels and mutation_info_labels to combinig_dfs_plotting
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2021-09-09 16:10:11 +01:00 |
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9bb3ac2a01
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moved all test scripts for functions to tests/
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2021-09-09 13:12:07 +01:00 |
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7dc72fb118
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replaced old lineage barplot with count and diversity combined plots sourced from function
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2021-09-07 09:27:47 +01:00 |
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357ceb8920
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one function with tuned params to generate count and diversity barplot
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2021-09-06 19:52:56 +01:00 |
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7ba6868b60
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added function for generating lineage barplots and also test script along wiadding script for processing data and added it to get_plotting_dfs.R
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2021-09-06 19:50:50 +01:00 |
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343f867eed
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saving work for the day
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2021-09-02 17:40:24 +01:00 |
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2c65bb25d8
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modified bp with option for adding stats and boxplplots. Moved old one to redundant
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2021-09-02 12:50:24 +01:00 |
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c8e21b928c
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added functions for bp with stat and tested them
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2021-08-27 14:05:00 +01:00 |
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873049b603
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renamed dm_om barplot function scriptto lf_bp_stability.R
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2021-08-27 13:03:39 +01:00 |
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14d1ec84ab
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added function for stats from lf data
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2021-08-27 13:01:52 +01:00 |
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eb19efd287
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added stat_bp_stability.R which needs to be a function for generating stat plots
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2021-08-26 16:37:56 +01:00 |
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e36e7736db
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playing with dm_om (other)plots data and graph on gid branch
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2021-08-26 16:35:46 +01:00 |
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1e3670f935
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added log10 OR and P values to myaf_or_calcs.R
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2021-08-23 20:01:01 +01:00 |
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0c16937b68
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added corr plots as function for interactive graphs on shiny
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2021-08-20 18:52:47 +01:00 |
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c0c30fd527
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adde format_results_dynamut2.py and ran shiny scripts for barplots
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2021-08-19 16:25:38 +01:00 |
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5eb07cdf86
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added leg_title size for bp function
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2021-07-07 13:11:13 +01:00 |
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c599d28377
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renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it.
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2021-06-29 14:05:48 +01:00 |
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a9f9cec494
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moved barplot_colour_function.R to functions
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2021-06-29 13:58:22 +01:00 |
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506e639a7b
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moved my_pairs_panel.R to functions/
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2021-06-24 12:13:15 +01:00 |
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762b1a3931
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fixed cmd running script problem for logo plots
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2021-06-24 12:12:36 +01:00 |
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e822f9f690
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added first line to all func to run from
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2021-06-24 10:02:14 +01:00 |
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7e6affea84
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added test_plotting_data.R, and replaced input param of csv into df
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2021-06-23 16:16:23 +01:00 |
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2aec79af31
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changes made to combining_dfs_plotting.R
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2021-06-23 16:15:15 +01:00 |
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13c61e7813
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moved combining_dfs_plotting.R to function and added test script for this as well
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2021-06-22 18:15:15 +01:00 |
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81ab3fe5ba
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added function and test for aa_prop_bp.R
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2021-06-14 09:22:05 +01:00 |
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f88e2665e9
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calculating af_or using function and cmd options now
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2021-06-11 15:12:08 +01:00 |
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7686aa39b4
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added script to test af_or_calcs
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2021-06-11 13:33:25 +01:00 |
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931f8ec2f9
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added mychisq_or.R and af_or_calcs.R
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2021-06-11 13:28:07 +01:00 |
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a2431b59e5
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minor tweak to plotting_globals.R to make gene_match a global var
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2021-06-11 11:21:20 +01:00 |
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f6259aa517
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moved functions/ in the scripts dir
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2021-06-11 11:11:39 +01:00 |
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