|
|
07aedfe286
|
added both test logo plots in one script
|
2022-01-16 15:00:54 +00:00 |
|
|
|
efe6703673
|
attempted omitting snp from logo plot for OR
|
2022-01-16 14:45:39 +00:00 |
|
|
|
1244581cdd
|
just added some minor tweaks for the logo plots with OR
|
2022-01-16 13:31:32 +00:00 |
|
|
|
9546355241
|
updated and tested logoP_snp.R. All done nicely
|
2022-01-15 13:17:26 +00:00 |
|
|
|
0334188801
|
adde tests scripts for logoP and logoP_snp.R
|
2022-01-14 16:10:49 +00:00 |
|
|
|
f640087922
|
added logoP_snp.R and renamed logo_plots_func.R to logoP.R
|
2022-01-14 16:09:57 +00:00 |
|
|
|
f27b536157
|
added option to remove empty positions from logo plot
|
2022-01-14 11:07:16 +00:00 |
|
|
|
4e2f5f35db
|
added log option to function properly
|
2022-01-14 10:50:56 +00:00 |
|
|
|
3b7cea3c47
|
adding legend forlogo plot
|
2022-01-14 10:18:01 +00:00 |
|
|
|
426a5cb0b5
|
added logo_plot function and test to check it
|
2022-01-13 18:55:13 +00:00 |
|
|
|
344a74a9e1
|
saving work for logo plots
|
2022-01-13 18:53:47 +00:00 |
|
|
|
7cbd9b4996
|
added barebone notes for logo_plots_func.R
|
2022-01-12 17:59:02 +00:00 |
|
|
|
3f7bc908ec
|
going through functions and script for interactive plots
|
2022-01-12 17:58:16 +00:00 |
|
|
|
1f266c4cb8
|
more tidying and formatting for combining_dfs.py. Hopefully no more after today
|
2022-01-11 17:51:28 +00:00 |
|
|
|
c48fa1dbb0
|
minor tidy up to check interactive graphs Rshiny
|
2022-01-07 16:07:44 +00:00 |
|
|
|
7d60a09297
|
tidy up
|
2022-01-06 16:38:59 +00:00 |
|
|
|
bffa3c376c
|
thorough checking and updates for final running of all gene targets
|
2022-01-05 17:55:35 +00:00 |
|
|
|
b66cf31219
|
added untracked files in scripts/plotting
|
2022-01-04 12:27:25 +00:00 |
|
|
|
3ab6a3dbc1
|
added untracked files in scripts and dynamut
|
2022-01-04 12:26:54 +00:00 |
|
|
|
00b84ccb1c
|
handled rpob 5uhc position offset in mcsm_ppi2
|
2022-01-04 10:45:29 +00:00 |
|
|
|
46e2c93885
|
merged changes from the combining_dfs.py file from branch 'embb_dev'
|
2021-11-24 07:58:27 +00:00 |
|
|
|
e5aca5e24f
|
fixed the duplicate colum problem by removing them from combining_dfs.py
|
2021-11-24 07:57:20 +00:00 |
|
|
|
4f52627740
|
Merge branch 'embb_dev'
|
2021-11-19 08:05:46 +00:00 |
|
|
|
436bdafece
|
added info re having run mcsm_na for RNAP
|
2021-11-19 07:51:13 +00:00 |
|
|
|
2925c89d11
|
ran mcsm_na for rpob's RNAP complex i.e 5UHC
|
2021-11-19 07:48:42 +00:00 |
|
|
|
cee10cc540
|
ran mcsm format for embb
|
2021-11-13 09:43:56 +00:00 |
|
|
|
c32de1bf0f
|
Merge branch 'embb_dev'
|
2021-11-12 14:37:10 +00:00 |
|
|
|
4eaa0b5d2b
|
saving work after running combining_dfs.py
|
2021-11-12 14:16:48 +00:00 |
|
|
|
dad8f526a2
|
added TESTING_plots.R
|
2021-11-09 13:55:21 +00:00 |
|
|
|
a5c7e1e9dd
|
added FIXME and TODO related to alr in combinig_dfs.py
|
2021-11-09 13:23:50 +00:00 |
|
|
|
ddae107314
|
saving work in LSHTM_analysis before combining data for targets
|
2021-11-09 12:44:11 +00:00 |
|
|
|
63ec8a1c37
|
added split_csv_chain.sh for mCSM-NA analysis in scripts/
|
2021-10-29 14:00:25 +01:00 |
|
|
|
8035308cdf
|
cherry-pick mcsm_na/run_format_results_mcsm_na.py from master to ensure consistency
|
2021-10-28 12:54:04 +01:00 |
|
|
|
e2bc1cdde1
|
Merge branch 'gidb_dev' (including merge conflict while after adding CLI arguments for mcsm_na/format_results_mcsm_na.py)
|
2021-10-28 12:45:39 +01:00 |
|
|
|
9cfb32afb8
|
pretending that we added the CLI arguments
|
2021-10-28 12:43:44 +01:00 |
|
|
|
45208f4c3d
|
saving ppi2 format script on embb_dev branch
|
2021-10-28 12:22:46 +01:00 |
|
|
|
e4661963ab
|
saving work after embb branch merge
|
2021-10-28 12:15:29 +01:00 |
|
|
|
3368e949e8
|
bring in embb stuff which was in the wrong branch
|
2021-10-28 11:18:13 +01:00 |
|
|
|
057291a561
|
much development
|
2021-10-28 10:41:43 +01:00 |
|
|
|
873fd3a121
|
added gene.lower to dynamut2 format result script
|
2021-10-19 11:12:34 +01:00 |
|
|
|
ba21188bd2
|
added notes
|
2021-10-18 13:58:06 +01:00 |
|
|
|
675b222181
|
added cmd option for dynamut2 formatting results
|
2021-10-18 13:52:29 +01:00 |
|
|
|
98325d763f
|
fixed output filename in deepddg_format.py
|
2021-09-30 13:37:17 +01:00 |
|
|
|
af227f9864
|
moved deepddg_format.py from ind output dir to scripts
|
2021-09-30 13:35:33 +01:00 |
|
|
|
93a91518e1
|
fix runFoldx so that it looks for a missing rotabase.txt in the process_dir and also print the foldx command that will be run
|
2021-09-29 18:24:06 +01:00 |
|
|
|
d443ecea6b
|
added separate script for splitting csv after adding chain ID. saves lots of post processing
|
2021-09-20 16:13:15 +01:00 |
|
|
|
daa3556ede
|
split csv for isoniazid
|
2021-09-20 16:12:45 +01:00 |
|
|
|
5cd6c300a7
|
saving minor update to function fix
|
2021-09-17 13:35:48 +01:00 |
|
|
|
e115c3636c
|
fixed lf_bp function with aes_string and reformulate
|
2021-09-17 13:33:19 +01:00 |
|
|
|
e2d7a6567e
|
minor bug fixes to allow i_graps for stability to render correctly
|
2021-09-16 18:59:02 +01:00 |
|
