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c80c87235e
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further tidy for OR calcs
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2020-06-23 12:19:26 +01:00 |
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e3ae1c3a95
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tody scracth script for various OR calcs
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2020-06-23 11:57:51 +01:00 |
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263527f576
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all OR calcs using sapply and output as df
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2020-06-22 18:17:06 +01:00 |
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6b5ced65e5
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extracting other params from logistic
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2020-06-22 14:11:16 +01:00 |
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28e52d4194
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script to combine ors and afs
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2020-06-22 13:07:26 +01:00 |
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c98ca7c8ae
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script to combine all ors
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2020-06-19 14:43:23 +01:00 |
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07258120de
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renamed files & added or kinship link file
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2020-06-19 10:33:26 +01:00 |
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c36197d75e
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updated Af and OR calcs script with argeparse and minor tidyup
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2020-06-18 18:37:55 +01:00 |
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f9a8ed3dc7
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getopt and commandArgs examples, and AF/OR update to use getopt()
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2020-06-18 17:59:28 +01:00 |
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864f814e1b
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removed merging df for AF_OR
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2020-06-18 16:10:02 +01:00 |
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3d1536f2b6
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af and or calcs, not merging
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2020-06-18 15:57:25 +01:00 |
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c4f9e24007
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foramtting and adding or
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2020-06-18 13:55:45 +01:00 |
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b73c506587
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added AF_and OR calcs script and making it generic
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2020-06-17 19:36:34 +01:00 |
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2cebd338ba
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ran struc param analysis
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2020-06-17 19:36:02 +01:00 |
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96da4d8ed5
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inlcuded the revised master file for 35k isolates
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2020-06-16 11:39:11 +01:00 |
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b28d0afded
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various debug, doc, and args
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2020-05-25 14:27:25 +01:00 |
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3a0ff9b35e
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added scratch/
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2020-05-22 12:03:11 +01:00 |
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73762568e8
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building script for inspecting pdb
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2020-05-22 11:57:59 +01:00 |
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bdad2dcfda
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fixing hetatm script
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2020-05-21 12:54:10 +01:00 |
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bc368be4b7
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added script for pairwise alignment
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2020-05-15 17:58:14 +01:00 |
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cf3e507475
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tidy up code
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2020-05-15 13:48:50 +01:00 |
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f28b287c86
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script for saving pdb chains in single file
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2020-05-15 13:44:57 +01:00 |
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bc2844dffb
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renamed extract chain file
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2020-05-15 10:59:19 +01:00 |
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ea213d09aa
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added pdb_chain splitter code and wrapper
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2020-05-13 16:54:20 +01:00 |
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6b527baaff
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added pdbtools from github source and modified seq.py to exclude hetatm seq extraction
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2020-05-12 14:08:08 +01:00 |
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5ac87e76c7
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adding commands for use of pdbtools
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2020-05-12 12:50:49 +01:00 |
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bc03aab82d
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add wrapper and mcsm library
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2020-04-16 17:45:24 +01:00 |
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95147b577c
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saving work for today
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2020-04-09 16:40:45 +01:00 |
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f42b6f725f
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minor tweaks
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2020-04-08 18:27:09 +01:00 |
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e1e0313fe8
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combine df script with command line args and added method
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2020-04-08 12:44:17 +01:00 |
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6f545413bc
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correcting indendation
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2020-04-08 12:43:37 +01:00 |
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60ac125d2b
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saving work for today
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2020-04-07 17:57:34 +01:00 |
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bead9a48bd
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adapted rd_df script to make it take command line args and define function
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2020-04-07 17:42:59 +01:00 |
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73ae22e8a2
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tidy kd_df script
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2020-04-07 17:42:06 +01:00 |
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ae541ca16a
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adapted kd calc script with command line args and made it into a function
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2020-04-07 16:45:59 +01:00 |
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129808d4a5
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updating kd script to take command line args
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2020-04-07 16:13:54 +01:00 |
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bf0568345e
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renamed file for consistency
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2020-04-07 16:04:01 +01:00 |
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91068f5bd1
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modified dssp_df to handle multiple chains
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2020-04-07 16:02:19 +01:00 |
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3a1431d8ed
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added dssp.py that runs, processes and outputs csv
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2020-04-07 15:08:18 +01:00 |
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08da425e7e
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adding settings params
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2020-04-06 19:04:35 +01:00 |
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3905a81c38
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refactoring code to make it take command line args
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2020-04-06 19:03:41 +01:00 |
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