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8dbe532937
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`resolved ambiguous muts and generated clean output. Also seaprated dir.R
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2020-09-09 11:26:13 +01:00 |
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f10f8f6d2a
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changing category of ambiguous muts
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2020-09-08 18:51:03 +01:00 |
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e980085294
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outputting revised all params file
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2020-09-08 17:52:45 +01:00 |
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f7ab799f74
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hopefully finally sorted data merges!
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2020-09-08 17:46:52 +01:00 |
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e4608342a4
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various changes
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2020-09-08 17:13:02 +01:00 |
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c72269dcd1
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trying other num param plots
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2020-09-07 17:17:56 +01:00 |
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4bab45c634
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ks test script added
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2020-09-07 15:27:53 +01:00 |
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739e9eadf8
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Combining dfs for PS and lig in one
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2020-09-07 14:05:46 +01:00 |
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93e19e3186
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lineage barplot script
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2020-09-07 11:29:28 +01:00 |
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95574d469b
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updated combining_two_df.R for plots
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2020-09-04 22:43:30 +01:00 |
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ef3a97d664
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script to plot lineage dist plots
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2020-09-04 22:40:49 +01:00 |
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5d0e2d94ce
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adding missing mutation col in combining_dfs
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2020-09-04 21:04:18 +01:00 |
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c48c5177ca
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resolving missing mutation info in combining script
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2020-09-04 20:56:16 +01:00 |
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d6552628e4
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added running scripts doc
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2020-08-26 17:20:01 +01:00 |
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de14752a0c
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all barplots generated for ps and lig
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2020-08-26 17:18:45 +01:00 |
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8ee7d4234e
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reflected change in running_scripts doc
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2020-08-26 16:41:10 +01:00 |
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25ff220b1d
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renamed file to reflect sucols_axis is commons script sourced by ps and lig plots
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2020-08-26 16:40:36 +01:00 |
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e0f14ed266
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sorted subcols_axis script to generate correct axis cols for both PS and lig plots
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2020-08-26 16:39:10 +01:00 |
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2e53c8007a
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generated subcolour bps for PS
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2020-08-26 12:45:09 +01:00 |
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7e0bddd7d2
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sourcing plotting_data for subcols_axis_PS
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2020-08-26 12:07:04 +01:00 |
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b5ad53f7d1
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added ligand df in plotting
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2020-08-26 10:02:44 +01:00 |
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1a00ab614f
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added instructions on running plot scripts
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2020-08-24 14:38:45 +01:00 |
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e696064d42
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generated replaced Bfactor pdbs
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2020-08-24 14:37:28 +01:00 |
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35a89f7761
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rectified mcsm_mean_stability to avereage on raw values and then scale
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2020-08-24 13:04:25 +01:00 |
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739a648154
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saving work to check merge conflicts resolved
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2020-08-24 11:20:58 +01:00 |
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9a97b2d2b4
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sourced plotting script in mean_stability calcs
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2020-08-21 17:33:09 +01:00 |
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89358cf843
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added plotting scripts from old run
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2020-08-21 13:25:01 +01:00 |
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40909d5951
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script to format snp_info.txt
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2020-08-21 13:23:29 +01:00 |
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59cb57a795
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updated script to combine dfs
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2020-08-21 13:22:28 +01:00 |
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208e0b6f62
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sorted df by position for output in data_extraction
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2020-08-14 17:57:12 +01:00 |
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87f5a9ca05
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tidy script for linking or_kinship with missense variant info
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2020-08-14 16:41:11 +01:00 |
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805868ce7e
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removed if clause for filenames
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2020-08-13 18:39:16 +01:00 |
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833e599550
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added output file for checking
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2020-08-11 18:34:02 +01:00 |
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dbf8865203
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saving work, ready for more remote working
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2020-08-07 13:35:02 +01:00 |
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779000ad4f
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added data cjeckings script
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2020-08-07 13:34:24 +01:00 |
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0e2e24134c
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saving work
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2020-08-07 13:33:44 +01:00 |
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e46e5484e8
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separting data processing from plotting, started with basic_barplots_PS script
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2020-07-16 18:59:17 +01:00 |
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8a8790a7d1
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replaced single quotes with double in R scripts
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2020-07-16 14:18:18 +01:00 |
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eed3450236
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mean stability values calcs and replaceBfactor plots
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2020-07-16 14:12:08 +01:00 |
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38759c6b0c
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calculating mean stabilty per position
please enter the commit message for your changes. Lines starting
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2020-07-16 10:37:40 +01:00 |
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bf4a427239
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scripts generating axis coloured subcols bp for PS
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2020-07-15 16:31:10 +01:00 |
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636100d383
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made tweaks to output plot filenames
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2020-07-15 16:29:36 +01:00 |
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b2b95b80fd
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adding plots as I tidy and generate
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2020-07-15 13:50:07 +01:00 |
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acc6a42880
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saved work before adding plots
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2020-07-15 13:36:20 +01:00 |
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f8fef60475
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saving work for today
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2020-07-14 16:13:17 +01:00 |
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f27c223bdd
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resolving merge conflicts dur to shoddy data
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2020-07-14 14:09:42 +01:00 |
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8dc2fa7326
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fixed white space prob with mcsm input with merge
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2020-07-14 14:07:23 +01:00 |
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c0827b56cc
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finding discrepancy in merging or dfs,grrrr
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2020-07-13 18:31:29 +01:00 |
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da0c03c2e0
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trying to resolve copy warning in code
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2020-07-13 12:20:43 +01:00 |
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5655af42c0
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added sanity checks for or_kinship calcs
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2020-07-13 11:37:43 +01:00 |
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