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777d3765cf
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a bunch of small changes
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2023-02-19 17:22:41 +00:00 |
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4976e9d8af
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saving
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2022-09-03 14:41:22 +01:00 |
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78704dec5a
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saving
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2022-09-03 12:28:21 +01:00 |
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c845d96102
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added combined_model_iterator.py that has oversampling
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2022-09-02 09:50:51 +01:00 |
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80b4a1850c
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tested to make sure the cols added dont break code
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2022-09-01 16:23:57 +01:00 |
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de9e6a709b
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added 3 cols for snp counts for ML
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2022-09-01 16:11:23 +01:00 |
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2bf91681b4
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preparing to rerun ML iterator
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2022-09-01 13:41:02 +01:00 |
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56b71c6ca2
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added avg affinity and stability cols with mask for avg affinity
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2022-09-01 13:04:37 +01:00 |
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e03ce277b7
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checked masked cols after running
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2022-09-01 12:57:38 +01:00 |
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f9129b9ebc
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added nca dist criteria for masking
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2022-09-01 12:55:38 +01:00 |
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f94eadf1d4
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added
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2022-09-01 12:54:41 +01:00 |
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82e2da4f3b
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ml df stuff
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2022-09-01 11:39:11 +01:00 |
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26f284d76e
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added test_func_combined.py
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2022-07-29 00:14:39 +01:00 |
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e55906d2c7
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saving work
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2022-07-29 00:12:43 +01:00 |
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85f59155fa
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uncommented all models for a full run
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2022-07-28 15:28:31 +01:00 |
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d3d5698a3e
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added MultClfs_CVs.py and ml_iterator_CVs.py
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2022-07-28 15:19:58 +01:00 |
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b87f8d0295
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trying diff cv thresholds for single gene
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2022-07-28 15:19:13 +01:00 |
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8d8a61675f
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various edits
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2022-07-28 13:20:14 +01:00 |
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584b866f0b
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moved ../ml_functions/MultClfs_logo_skf.py to del
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2022-07-28 12:25:29 +01:00 |
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2c50124b1b
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moved logo_skf function to del as using the MultClfs for combined data
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2022-07-28 12:24:24 +01:00 |
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744bc8f4a1
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added dummy classifier to models
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2022-07-27 17:10:04 +01:00 |
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63c8876764
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checking the splitTTS script to make sure other splits have been factored in
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2022-07-27 15:52:20 +01:00 |
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f4cab1fdfb
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fixed masking condition for ML training data for genes and wrote revised mask files out
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2022-07-27 13:36:16 +01:00 |
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0adf69f75a
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added model names sklearn
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2022-07-16 15:35:42 +01:00 |
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39e72b2dfb
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added all_estimators
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2022-07-16 13:32:19 +01:00 |
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33e3b5a0a6
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various bugs
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2022-07-12 10:14:06 +01:00 |
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6950c4b057
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added reverse traininig as split type in SplitTTS.py
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2022-07-11 20:03:06 +01:00 |
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1965517681
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added other split_type options i.e none and none with bts
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2022-07-11 19:27:14 +01:00 |
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350be30f19
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minor changes to run combined_model
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2022-07-10 13:23:13 +01:00 |
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9594d0a328
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uncommented models for logo
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2022-07-10 12:53:51 +01:00 |
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de5c1270be
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added Mult_clfs_logo and Mult_clsf.py with consistency
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2022-07-10 12:32:52 +01:00 |
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06f2ce97b6
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minor var name fix for MultClfs.py and ml_iterator
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2022-07-09 11:02:37 +01:00 |
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8bde6f0640
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minor var bame update in ml_iterator
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2022-07-09 10:52:50 +01:00 |
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8079dd7b6c
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reran to generate merged_df3 with correct dst for dst muts. modified combining_dfs_plotting.R
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2022-07-08 21:33:57 +01:00 |
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289c8913d0
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added MultClds_SIMPLE.py to simplify my function to run without blind test
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2022-07-08 13:54:49 +01:00 |
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880ef46099
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added CHECK_model
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2022-07-08 13:53:44 +01:00 |
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23799275a0
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saving work from thinkpad
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2022-07-08 13:53:17 +01:00 |
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a15d801c2a
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tried pca
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2022-07-05 23:05:37 +01:00 |
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8d831f3613
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added different scaling options
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2022-07-05 22:47:13 +01:00 |
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ebef0c7967
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added test script to see one gene
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2022-07-05 16:06:24 +01:00 |
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79cb89a019
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saving work
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2022-07-05 16:06:03 +01:00 |
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652cf4802e
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added MultClfs_fi to add FI scores for models, in development
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2022-07-05 14:19:35 +01:00 |
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53c229f480
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added random state to split in function
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2022-07-05 14:15:43 +01:00 |
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b2d0b827ad
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added cm run for logo_skf for actual data
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2022-07-02 16:57:11 +01:00 |
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dccd3c8eb2
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multiple changes
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2022-07-02 10:25:55 +01:00 |
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2fda32901b
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change more hardcoded CPU counts to os.cpu_count()
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2022-07-02 10:25:13 +01:00 |
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b8653c6afe
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ML scripts: {'n_jobs': os.cpu_count() }
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2022-07-02 10:22:07 +01:00 |
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b5777a17c9
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saving work
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2022-07-01 20:37:41 +01:00 |
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d812835713
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added cm_logo_skf.py and placeholder for splits
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2022-07-01 13:55:12 +01:00 |
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952cfeb4c0
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added MultClf for combined model to make changes with cv
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2022-07-01 11:40:23 +01:00 |
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